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run_all_tests.yml
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name: Run all tests
on:
pull_request:
types: [synchronize, opened, reopened]
branches:
- main
schedule:
- cron: '0 5 * * 0' # once every Sunday at midnight ET
workflow_dispatch:
jobs:
run-all-tests:
name: ${{ matrix.name }}
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash
strategy:
fail-fast: false
matrix:
include:
- { name: linux-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: ubuntu-latest }
- { name: linux-python3.8 , requirements: pinned , python-ver: "3.8" , os: ubuntu-latest }
- { name: linux-python3.9 , requirements: pinned , python-ver: "3.9" , os: ubuntu-latest }
- { name: linux-python3.10 , requirements: pinned , python-ver: "3.10", os: ubuntu-latest }
- { name: linux-python3.11 , requirements: pinned , python-ver: "3.11", os: ubuntu-latest }
- { name: linux-python3.12 , requirements: pinned , python-ver: "3.12", os: ubuntu-latest }
- { name: linux-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: ubuntu-latest }
- { name: windows-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: windows-latest }
- { name: windows-python3.8 , requirements: pinned , python-ver: "3.8" , os: windows-latest }
- { name: windows-python3.9 , requirements: pinned , python-ver: "3.9" , os: windows-latest }
- { name: windows-python3.10 , requirements: pinned , python-ver: "3.10", os: windows-latest }
- { name: windows-python3.11 , requirements: pinned , python-ver: "3.11", os: windows-latest }
- { name: windows-python3.12 , requirements: pinned , python-ver: "3.12", os: windows-latest }
- { name: windows-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: windows-latest }
- { name: macos-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: macos-latest }
- { name: macos-python3.8 , requirements: pinned , python-ver: "3.8" , os: macos-latest }
- { name: macos-python3.9 , requirements: pinned , python-ver: "3.9" , os: macos-latest }
- { name: macos-python3.10 , requirements: pinned , python-ver: "3.10", os: macos-latest }
- { name: macos-python3.11 , requirements: pinned , python-ver: "3.11", os: macos-latest }
- { name: macos-python3.12 , requirements: pinned , python-ver: "3.12", os: macos-latest }
- { name: macos-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: macos-latest }
steps:
- name: Cancel non-latest runs
uses: styfle/[email protected]
with:
all_but_latest: true
access_token: ${{ github.token }}
- uses: actions/checkout@v3
with:
submodules: 'recursive'
fetch-depth: 0 # fetch tags
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-ver }}
- name: Install build dependencies
run: |
python -m pip install --upgrade pip
python -m pip list
python -m pip check
- name: Install run requirements (minimum)
if: ${{ matrix.requirements == 'minimum' }}
run: |
python -m pip install -r requirements-min.txt -r requirements-dev.txt
python -m pip install -e .
- name: Install run requirements (pinned)
if: ${{ matrix.requirements == 'pinned' }}
run: |
python -m pip install -r requirements-dev.txt
python -m pip install -e .
- name: Install run requirements (upgraded)
if: ${{ matrix.requirements == 'upgraded' }}
run: |
python -m pip install -r requirements-dev.txt
python -m pip install -U -e .
- name: Run tests
run: |
pytest -v
- name: Build wheel and source distribution
run: |
python -m pip install --upgrade build
python -m build
ls -1 dist
- name: Test installation from a wheel (POSIX)
if: ${{ matrix.os != 'windows-latest' }}
run: |
python -m venv test-wheel-env
source test-wheel-env/bin/activate
python -m pip install dist/*-none-any.whl
python -c "import ndx_binned_spikes"
- name: Test installation from a wheel (windows)
if: ${{ matrix.os == 'windows-latest' }}
run: |
python -m venv test-wheel-env
test-wheel-env/Scripts/activate.bat
python -m pip install dist/*-none-any.whl
python -c "import ndx_binned_spikes"
run-all-tests-on-conda:
name: ${{ matrix.name }}
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0} # needed for conda environment to work
strategy:
fail-fast: false
matrix:
include:
- { name: conda-linux-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: ubuntu-latest }
- { name: conda-linux-python3.8 , requirements: pinned , python-ver: "3.8" , os: ubuntu-latest }
- { name: conda-linux-python3.9 , requirements: pinned , python-ver: "3.9" , os: ubuntu-latest }
- { name: conda-linux-python3.10 , requirements: pinned , python-ver: "3.10", os: ubuntu-latest }
- { name: conda-linux-python3.11 , requirements: pinned , python-ver: "3.11", os: ubuntu-latest }
- { name: conda-linux-python3.12 , requirements: pinned , python-ver: "3.12", os: ubuntu-latest }
- { name: conda-linux-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: ubuntu-latest }
steps:
- name: Cancel any previous incomplete runs
uses: styfle/[email protected]
with:
access_token: ${{ github.token }}
- uses: actions/checkout@v3
with:
submodules: 'recursive'
fetch-depth: 0 # fetch tags
- name: Set up Conda
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: true
auto-activate-base: true
activate-environment: true
python-version: ${{ matrix.python-ver }}
- name: Install build dependencies
run: |
conda config --set always_yes yes --set changeps1 no
conda info
conda config --show-sources
conda list --show-channel-urls
- name: Install run requirements (minimum)
if: ${{ matrix.requirements == 'minimum' }}
run: |
python -m pip install -r requirements-min.txt -r requirements-dev.txt
python -m pip install -e .
- name: Install run requirements (pinned)
if: ${{ matrix.requirements == 'pinned' }}
run: |
python -m pip install -r requirements-dev.txt
python -m pip install -e .
- name: Install run requirements (upgraded)
if: ${{ matrix.requirements == 'upgraded' }}
run: |
python -m pip install -r requirements-dev.txt
python -m pip install -U -e .
- name: Run tests
run: |
pytest -v
- name: Build wheel and source distribution
run: |
python -m pip install --upgrade build
python -m build
ls -1 dist
- name: Test installation from a wheel (POSIX)
run: |
python -m venv test-wheel-env
source test-wheel-env/bin/activate
python -m pip install dist/*-none-any.whl
python -c "import ndx_binned_spikes"