cron_gen_heatmap

#!/bin/bash
# Script to be added on cron job
# Location of the data file must be recorded in environment.env of the directory this script was called from.
DIR="$PWD"
INST_DIR=`cat $PWD/environment.env | grep INST_DIR | awk -F'=' '{print $2}'`
MODULE_NAME=`cat $PWD/environment.env | grep MODULE_NAME | awk -F'=' '{print $2}'`
INST_PATH="${INST_DIR}${MODULE_NAME}/osu-benchmarks"

source ~/.bashrc
module load python/3.6.6 osu-mpi/$MODULE_NAME
source $INST_PATH/../osu_env/bin/activate
python3 $INST_PATH/sql_connect.py r