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output /opt.. viral-pipelines CI #1487: Commit c4b8671 pushed by schaluva
August 22, 2023 21:43 18m 18s subsampler
subsampler
August 22, 2023 21:43 18m 18s
hold output from opt/subsampler dir viral-pipelines CI #1486: Commit 8b94ebe pushed by schaluva
August 22, 2023 21:32 16m 42s subsampler
subsampler
August 22, 2023 21:32 16m 42s
reset push to dockstore viral-pipelines CI #1485: Commit 53839db pushed by schaluva
August 22, 2023 20:34 20m 21s subsampler
subsampler
August 22, 2023 20:34 20m 21s
add in all rule inputs viral-pipelines CI #1484: Commit 388be77 pushed by schaluva
August 22, 2023 18:35 19m 0s subsampler
subsampler
August 22, 2023 18:35 19m 0s
point to right dir viral-pipelines CI #1483: Commit 4299b4c pushed by schaluva
August 22, 2023 17:33 22m 15s subsampler
subsampler
August 22, 2023 17:33 22m 15s
set outputs viral-pipelines CI #1482: Commit b861b55 pushed by schaluva
August 22, 2023 17:24 16m 30s subsampler
subsampler
August 22, 2023 17:24 16m 30s
test subsampler viral-pipelines CI #1481: Commit a74b0bf pushed by schaluva
August 22, 2023 17:16 18m 48s subsampler
subsampler
August 22, 2023 17:16 18m 48s
bugfix output location of fasta in download_annotations; pass NCBI API key to tasks: download_fasta, download_annotations viral-pipelines CI #1480: Pull request #481 synchronize by tomkinsc
August 10, 2023 20:40 10m 16s ct-bugfix-ncbi-fasta-fetch
ct-bugfix-ncbi-fasta-fetch
August 10, 2023 20:40 10m 16s
s/apiKey/apiKeyNCBI/ viral-pipelines CI #1479: Commit fe0e860 pushed by tomkinsc
August 10, 2023 20:40 16m 31s ct-bugfix-ncbi-fasta-fetch
ct-bugfix-ncbi-fasta-fetch
August 10, 2023 20:40 16m 31s
bugfix output location of fasta in download_annotations; pass NCBI API key to tasks: download_fasta, download_annotations viral-pipelines CI #1478: Pull request #481 opened by tomkinsc
August 10, 2023 18:56 44s ct-bugfix-ncbi-fasta-fetch
ct-bugfix-ncbi-fasta-fetch
August 10, 2023 18:56 44s
write combined fasta as temp file, then move to final output path in … viral-pipelines CI #1477: Commit 81c17a5 pushed by tomkinsc
August 10, 2023 18:56 48s ct-bugfix-ncbi-fasta-fetch
ct-bugfix-ncbi-fasta-fetch
August 10, 2023 18:56 48s
bugfix output location of fasta in download_annotations; pass NCBI AP… viral-pipelines CI #1476: Commit 014f69f pushed by tomkinsc
August 10, 2023 18:51 43s ct-bugfix-ncbi-fasta-fetch
ct-bugfix-ncbi-fasta-fetch
August 10, 2023 18:51 43s
hotfix for bug in output path viral-pipelines CI #1475: Pull request #480 opened by dpark01
August 10, 2023 17:43 18m 9s dp-fetch_annot_fix
dp-fetch_annot_fix
August 10, 2023 17:43 18m 9s
hotfix for bug in output path viral-pipelines CI #1474: Commit 0d60a78 pushed by dpark01
August 10, 2023 17:43 20m 57s dp-fetch_annot_fix
dp-fetch_annot_fix
August 10, 2023 17:43 20m 57s
extend beast task and workflow to glob and output *.ops, *.rates, and *.root files viral-pipelines CI #1473: Pull request #478 synchronize by tomkinsc
August 8, 2023 14:26 23m 24s ct-additional-beast-outputs
ct-additional-beast-outputs
August 8, 2023 14:26 23m 24s
configure sam-dump to pull full (i.e. with quality scores) and not "S… viral-pipelines CI #1472: Commit 08d6039 pushed by tomkinsc
August 8, 2023 14:26 20m 0s ct-additional-beast-outputs
ct-additional-beast-outputs
August 8, 2023 14:26 20m 0s
extend beast task and workflow to glob and output *.ops, *.rates, and *.root files viral-pipelines CI #1471: Pull request #478 opened by tomkinsc
July 28, 2023 17:18 19m 15s ct-additional-beast-outputs
ct-additional-beast-outputs
July 28, 2023 17:18 19m 15s
extend beast task and workflow to glob and output *.ops, *.rates, and… viral-pipelines CI #1470: Commit 0999952 pushed by tomkinsc
July 28, 2023 17:17 17m 9s ct-additional-beast-outputs
ct-additional-beast-outputs
July 28, 2023 17:17 17m 9s
add workflow: fetch_sra_bams_for_genbank_accession viral-pipelines CI #1469: Pull request #475 synchronize by tomkinsc
July 26, 2023 20:47 18m 6s ct-fetch-sra-bams-for-genbank-accession
ct-fetch-sra-bams-for-genbank-accession
July 26, 2023 20:47 18m 6s
Merge branch 'master' into ct-fetch-sra-bams-for-genbank-accession viral-pipelines CI #1468: Commit 8ba6bbc pushed by tomkinsc
July 26, 2023 20:47 13m 22s ct-fetch-sra-bams-for-genbank-accession
ct-fetch-sra-bams-for-genbank-accession
July 26, 2023 20:47 13m 22s
move transposed parameter_meta block outside command block scope to w… viral-pipelines CI #1467: Commit bfdb4cd pushed by tomkinsc
July 26, 2023 20:46 18m 25s master
master
July 26, 2023 20:46 18m 25s
move transposed parameter_meta block outside command block scope to where it belongs viral-pipelines CI #1466: Pull request #477 synchronize by tomkinsc
July 26, 2023 20:41 17m 2s ct-fix-wdl-meta-transposition
ct-fix-wdl-meta-transposition
July 26, 2023 20:41 17m 2s
add missing commas viral-pipelines CI #1465: Commit e2ae39a pushed by tomkinsc
July 26, 2023 20:41 19m 46s ct-fix-wdl-meta-transposition
ct-fix-wdl-meta-transposition
July 26, 2023 20:41 19m 46s
move transposed parameter_meta block outside command block scope to where it belongs viral-pipelines CI #1464: Pull request #477 opened by tomkinsc
July 26, 2023 20:38 16m 1s ct-fix-wdl-meta-transposition
ct-fix-wdl-meta-transposition
July 26, 2023 20:38 16m 1s
move transposed parameter_meta block outside command block scope wher… viral-pipelines CI #1463: Commit 0f3ea35 pushed by tomkinsc
July 26, 2023 20:36 16m 5s ct-fix-wdl-meta-transposition
ct-fix-wdl-meta-transposition
July 26, 2023 20:36 16m 5s
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