pythonpackage.yml

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: Python package

on:
  push:
    branches-ignore:
      - master
  pull_request:

concurrency:
  group: ${{ github.ref }}
  cancel-in-progress: true

jobs:
  pytest:

    runs-on: ubuntu-latest
    if: always()
    strategy:
      matrix:
        python-version: [3.8, 3.9, '3.10', 3.x]
        pip-packages:
          - "setuptools pip pytest pytest-cov coverage codecov boutdata xarray numpy>=1.16.0"
      fail-fast: false

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v1
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        sudo apt-get update && sudo apt-get install libhdf5-dev libnetcdf-dev
        python -m pip install --upgrade pip
        pip install --upgrade ${{ matrix.pip-packages }}
        pip install -e .
    - name: Test with pytest
      run: |
        pip install pytest
        pytest -v --long --cov
    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v1


  pytest-min-versions:

    runs-on: ubuntu-latest
    if: always()
    strategy:
      matrix:
        python-version: [3.8]
        pip-packages:
          - "setuptools pip pytest pytest-cov coverage codecov boutdata==0.1.4 xarray==0.18.0 dask==2.10.0 numpy==1.18.0 natsort==5.5.0 matplotlib==3.1.1 animatplot==0.4.2 netcdf4==1.4.2 Pillow==7.2.0" # test with oldest supported version of packages. Note, using numpy==1.18.0 as a workaround because numpy==1.17.0 is not supported on Python-3.7, even though we should currently support numpy==1.17.0.
      fail-fast: false

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v1
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        sudo apt-get update && sudo apt-get install libhdf5-dev libnetcdf-dev
        python -m pip install --upgrade pip
        pip install --upgrade ${{ matrix.pip-packages }}
        pip install -e .
    - name: Test with pytest
      run: |
        pip install pytest
        pytest -v --long --cov
    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v1


  # Need to tidy up the things that flake8 finds before we activate this
  #flake8:

  #  runs-on: ubuntu-latest
  #  if: always()

  #  steps:
  #  - uses: actions/checkout@v2
  #  - name: Set up Python
  #    uses: actions/setup-python@v1
  #  - name: Install dependencies
  #    run: |
  #      python -m pip install --upgrade pip
  #  - name: Lint with flake8
  #    run: |
  #      pip install flake8
  #      flake8


  black:

    runs-on: ubuntu-latest
    if: always()

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python
      uses: actions/setup-python@v1
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
    - name: Check formatting with black
      run: |
        pip install black
        black --check .