diff --git a/core/genesis.go b/core/genesis.go
index c13f4abb5c..7418aacafd 100644
--- a/core/genesis.go
+++ b/core/genesis.go
@@ -174,7 +174,7 @@ func flushAlloc(ga *types.GenesisAlloc, db ethdb.Database, triedb *triedb.Databa
 		return err
 	}
 	// Commit newly generated states into disk if it's not empty.
-	if root != types.EmptyRootHash {
+	if root != types.EmptyRootHash && triedb.Scheme() != rawdb.VersionScheme {
 		if err := triedb.Commit(root, true); err != nil {
 			return err
 		}
diff --git a/core/state/caching_versa_db.go b/core/state/caching_versa_db.go
index 9559f31cb1..5e33b501d1 100644
--- a/core/state/caching_versa_db.go
+++ b/core/state/caching_versa_db.go
@@ -52,8 +52,8 @@ func (cv *cachingVersaDB) OpenTrie(root common.Hash) (Trie, error) {
 		panic("account tree has open")
 	}
 
-	// TODO:: if root tree, versa db shouldb ignore check version
-	state, err := cv.versionDB.OpenState(0, root, cv.mode)
+	// TODO:: if root tree, versa db should ignore check version, temp use -1
+	state, err := cv.versionDB.OpenState(-1, root, cv.mode)
 	if err != nil {
 		return nil, err
 	}
diff --git a/go.mod b/go.mod
index c17d26c0da..2d4e4ed423 100644
--- a/go.mod
+++ b/go.mod
@@ -12,7 +12,7 @@ require (
 	github.com/aws/aws-sdk-go-v2/service/route53 v1.30.2
 	github.com/bnb-chain/fastssz v0.1.2
 	github.com/bnb-chain/ics23 v0.1.0
-	github.com/bnb-chain/versioned-state-database v0.0.0-20240809035848-76ffc0e09a92
+	github.com/bnb-chain/versioned-state-database v0.0.0-00010101000000-000000000000
 	github.com/btcsuite/btcd/btcec/v2 v2.3.2
 	github.com/cespare/cp v1.1.1
 	github.com/cloudflare/cloudflare-go v0.79.0