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  • Portugal

Organizations

@CoBiG2 @lnug @biojs @bionode @wurmlab @biojupyter @SBCSnicholsLab @mozfellows-hack

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bmpvieira/README.md

Bruno Vieira

Software - Bioinformatics - Genomics

🌐 Website ✉️ Email :octocat: github.com/bmpvieira Ⓜ️edium.com/@bmpvieira

Technical Skills

  • Data Science / Machine Learning
    • Python (Numpy, Pandas, Rapids, PyTorch, Datashader, Dask, Jupyter,...)
    • R (tidyverse, ggplot2,...)
  • Bioinformatics
    • Founder of Bionode.io community (Node.js Streams for Genomic Big Data)
    • Advanced Shell Scripting (BASH, Fish, ZSH,...)
    • Analysis Pipelines Workflows (Nextflow, SnakeMake,...)
  • Full Stack
    • Node.js, TypeScript, Ember, Angular, Express, MongoDB, SQL, HTML5, CSS3
  • DevOps
    • Docker, Singularity
    • AWS, Azure, Google Cloud
    • NixOS, Arch Linux, Ubuntu
    • Git, GitHub, GitLab
    • Unit Testing, Continuous Integration
  • Exposure and interests
    • Rust, Swift

Communication & Teaching (🇵🇹🇬🇧🇫🇷 speaker)

  • 2016-2017 | Awarded Mozilla Science Lab fellowship (one of four, out of 483 submissions) to travel around the world and champion Open Science through talks, workshops, and hackathons.
  • 2016-2018 | Mentored 3 Google Summer of Code students for the Open Bioinformatics Foundation to build genomic data analysis workflows.
  • 2014-2018 | Master's in Bioinformatics and R course instructor at Queen Mary, U. of London during PhD.
  • 2012 | Instructor and Content Developer for Python 101 Course at U. of Lisbon
  • Speaker at multiple international conferences, meetups and hackathons for Bioinformatics, Open Science, Reproducibility, and Node.js.

Education & Work Experience

Full CV @ linkedin.com/in/bmpvieira/

Popular repositories Loading

  1. simple-corsproxy simple-corsproxy Public

    Proxy to access resources that lack the Access-Control-Allow-Origin * header

    JavaScript 31 12

  2. heroku-dat-template heroku-dat-template Public

    A simple Heroku app template for deploying Dat

    JavaScript 16 8

  3. python101 python101 Public archive

    Python 101 course slides

    Python 12 4

  4. Dockerfiles Dockerfiles Public

    My Dockerfiles. Trusted Builds also available in the Docker registry

    Shell 6

  5. gulp-reveal gulp-reveal Public archive

    HTML to Reveal.js

    HTML 5 6

  6. cobig2 cobig2 Public archive

    AngularJS app that uses many APIs. Used in the new CoBiG² website.

    CoffeeScript 2 3