diff --git a/R/takagi_sim.R b/R/takagi_sim.R index 06bd6af..1260ad3 100644 --- a/R/takagi_sim.R +++ b/R/takagi_sim.R @@ -98,7 +98,7 @@ simulateConfInt <- function(popStruc = "F2", if (popStruc == "F2") { message( "Assuming bulks selected from F2 population, with ", - bulkSize, + paste(bulkSize, collapse = " and "), " individuals per bulk." ) } else { diff --git a/vignettes/QTLseqr.Rmd b/vignettes/QTLseqr.Rmd index 62570e1..515f81a 100644 --- a/vignettes/QTLseqr.Rmd +++ b/vignettes/QTLseqr.Rmd @@ -371,7 +371,8 @@ df_filt <- runQTLseqAnalysis(df_filt, ) ``` ```{r atlseqanalysis-msg, message = TRUE, warning = FALSE, collapse = TRUE, echo = FALSE} -df_filt <- runQTLseqAnalysis(df_filt, +df_filt <- runQTLseqAnalysis( + df_filt, windowSize = 1e6, popStruc = "F2", bulkSize = c(385, 430), diff --git a/vignettes/QTLseqr.pdf b/vignettes/QTLseqr.pdf index 5818150..8858943 100644 Binary files a/vignettes/QTLseqr.pdf and b/vignettes/QTLseqr.pdf differ