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if i not the root ,can this workflow run without docker #89
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Hi Jiaxuan, Sure! If you want to run WDL pipelines on a local HPC, you can use cromwell as the execution engine. It has support to convert docker image to singularity container: https://cromwell.readthedocs.io/en/stable/tutorials/Containers/#singularity We use cromwell and singularity on our local Slurm HPC which works smoothly. Cheers, |
Hi Leon, I have two questions related to the original question on this thread. I hope to use this workflow on our local HPC where we don't have docker, just singularity.
Thanks again for your help and for sharing this workflow. Regards, -John |
Hi John,
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Thank you very much for sharing the software.
I don't have root permission, and I can't run docker.
If not docker image, can I run it successfully?
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