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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<title>BioC++: bio/alphabet/quality/aliases.hpp Source File</title>
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<a href="aliases_8hpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="comment">// -----------------------------------------------------------------------------------------------------</span></div>
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="comment">// Copyright (c) 2022 deCODE Genetics</span></div>
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="comment">// Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin</span></div>
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="comment">// Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik</span></div>
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="comment">// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License</span></div>
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="comment">// shipped with this file and also available at: https://github.com/biocpp/biocpp-core/blob/main/LICENSE.md</span></div>
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="comment">// -----------------------------------------------------------------------------------------------------</span></div>
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span> </div>
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="preprocessor">#pragma once</span></div>
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> </div>
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span><span class="preprocessor">#include <<a class="code" href="alphabet_2concept_8hpp.html">bio/alphabet/concept.hpp</a>></span></div>
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span><span class="preprocessor">#include <<a class="code" href="dna15_8hpp.html">bio/alphabet/nucleotide/dna15.hpp</a>></span></div>
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span><span class="preprocessor">#include <<a class="code" href="dna4_8hpp.html">bio/alphabet/nucleotide/dna4.hpp</a>></span></div>
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span><span class="preprocessor">#include <<a class="code" href="dna5_8hpp.html">bio/alphabet/nucleotide/dna5.hpp</a>></span></div>
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span><span class="preprocessor">#include <<a class="code" href="rna15_8hpp.html">bio/alphabet/nucleotide/rna15.hpp</a>></span></div>
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span><span class="preprocessor">#include <<a class="code" href="rna4_8hpp.html">bio/alphabet/nucleotide/rna4.hpp</a>></span></div>
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span><span class="preprocessor">#include <<a class="code" href="rna5_8hpp.html">bio/alphabet/nucleotide/rna5.hpp</a>></span></div>
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span><span class="preprocessor">#include <<a class="code" href="alphabet_2quality_2concept_8hpp.html">bio/alphabet/quality/concept.hpp</a>></span></div>
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span><span class="preprocessor">#include <<a class="code" href="phred42_8hpp.html">bio/alphabet/quality/phred42.hpp</a>></span></div>
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span><span class="preprocessor">#include <<a class="code" href="qualified_8hpp.html">bio/alphabet/quality/qualified.hpp</a>></span></div>
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> </div>
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacebio_1_1alphabet.html">bio::alphabet</a></div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span>{</div>
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> </div>
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"><a class="line" href="namespacebio_1_1alphabet.html#aee3aa5dc0944a8c475a5be966eb4b389"> 31</a></span><span class="keyword">using </span><a class="code hl_class" href="classbio_1_1alphabet_1_1qualified.html">dna4q</a> = <a class="code hl_class" href="classbio_1_1alphabet_1_1qualified.html">qualified<dna4, phred42></a>;</div>
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> </div>
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"><a class="line" href="namespacebio_1_1alphabet.html#a75fb9b7d161113029421a7e0d559b6f6"> 34</a></span><span class="keyword">using </span><a class="code hl_class" href="classbio_1_1alphabet_1_1qualified.html">dna5q</a> = <a class="code hl_class" href="classbio_1_1alphabet_1_1qualified.html">qualified<dna5, phred42></a>;</div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> </div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"><a class="line" href="namespacebio_1_1alphabet.html#ae752183f71604cbe30e27c9fdaf7a2a5"> 37</a></span><span class="keyword">using </span><a class="code hl_class" href="classbio_1_1alphabet_1_1qualified.html">rna4q</a> = <a class="code hl_class" href="classbio_1_1alphabet_1_1qualified.html">qualified<rna4, phred42></a>;</div>
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> </div>
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"><a class="line" href="namespacebio_1_1alphabet.html#a310d5422eb8f67cb0b1ef07b7786e9d6"> 40</a></span><span class="keyword">using </span><a class="code hl_class" href="classbio_1_1alphabet_1_1qualified.html">rna5q</a> = <a class="code hl_class" href="classbio_1_1alphabet_1_1qualified.html">qualified<rna5, phred42></a>;</div>
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> </div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"><a class="line" href="namespacebio_1_1alphabet.html#ad5e656ee1491695573c945efa713a95d"> 43</a></span><span class="keyword">using </span><a class="code hl_class" href="classbio_1_1alphabet_1_1qualified.html">dna15q</a> = <a class="code hl_class" href="classbio_1_1alphabet_1_1qualified.html">qualified<dna15, phred42></a>;</div>
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> </div>
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"><a class="line" href="namespacebio_1_1alphabet.html#a3025f9f9c14e04ca2532df256e0a2d3a"> 46</a></span><span class="keyword">using </span><a class="code hl_class" href="classbio_1_1alphabet_1_1qualified.html">rna15q</a> = <a class="code hl_class" href="classbio_1_1alphabet_1_1qualified.html">qualified<rna15, phred42></a>;</div>
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> </div>
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span>} <span class="comment">// namespace bio::alphabet</span></div>
<div class="ttc" id="aalphabet_2concept_8hpp_html"><div class="ttname"><a href="alphabet_2concept_8hpp.html">concept.hpp</a></div><div class="ttdoc">Core alphabet concept and free function/type trait wrappers.</div></div>
<div class="ttc" id="aalphabet_2quality_2concept_8hpp_html"><div class="ttname"><a href="alphabet_2quality_2concept_8hpp.html">concept.hpp</a></div><div class="ttdoc">Quality alphabet concept.</div></div>
<div class="ttc" id="aclassbio_1_1alphabet_1_1qualified_html"><div class="ttname"><a href="classbio_1_1alphabet_1_1qualified.html">bio::alphabet::qualified</a></div><div class="ttdoc">Joins an arbitrary alphabet with a quality alphabet.</div><div class="ttdef"><b>Definition:</b> qualified.hpp:59</div></div>
<div class="ttc" id="adna15_8hpp_html"><div class="ttname"><a href="dna15_8hpp.html">dna15.hpp</a></div><div class="ttdoc">Provides bio::alphabet::dna15, container aliases and string literals.</div></div>
<div class="ttc" id="adna4_8hpp_html"><div class="ttname"><a href="dna4_8hpp.html">dna4.hpp</a></div><div class="ttdoc">Provides bio::alphabet::dna4, container aliases and string literals.</div></div>
<div class="ttc" id="adna5_8hpp_html"><div class="ttname"><a href="dna5_8hpp.html">dna5.hpp</a></div><div class="ttdoc">Provides bio::alphabet::dna5, container aliases and string literals.</div></div>
<div class="ttc" id="anamespacebio_1_1alphabet_html"><div class="ttname"><a href="namespacebio_1_1alphabet.html">bio::alphabet</a></div><div class="ttdoc">The alphabet module's namespace.</div><div class="ttdef"><b>Definition:</b> aa10li.hpp:23</div></div>
<div class="ttc" id="aphred42_8hpp_html"><div class="ttname"><a href="phred42_8hpp.html">phred42.hpp</a></div><div class="ttdoc">Provides bio::alphabet::phred42 quality scores.</div></div>
<div class="ttc" id="aqualified_8hpp_html"><div class="ttname"><a href="qualified_8hpp.html">qualified.hpp</a></div><div class="ttdoc">Provides quality alphabet composites.</div></div>
<div class="ttc" id="arna15_8hpp_html"><div class="ttname"><a href="rna15_8hpp.html">rna15.hpp</a></div><div class="ttdoc">Provides bio::alphabet::rna15, container aliases and string literals.</div></div>
<div class="ttc" id="arna4_8hpp_html"><div class="ttname"><a href="rna4_8hpp.html">rna4.hpp</a></div><div class="ttdoc">Provides bio::alphabet::rna4, container aliases and string literals.</div></div>
<div class="ttc" id="arna5_8hpp_html"><div class="ttname"><a href="rna5_8hpp.html">rna5.hpp</a></div><div class="ttdoc">Provides bio::alphabet::rna5, container aliases and string literals.</div></div>
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