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aliases_8hpp.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<title>BioC++: bio/alphabet/quality/aliases.hpp File Reference</title>
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<div class="headertitle"><div class="title">aliases.hpp File Reference</div></div>
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<p>Provides aliases for qualified.
<a href="#details">More...</a></p>
<div class="textblock"><code>#include <<a class="el" href="alphabet_2concept_8hpp_source.html">bio/alphabet/concept.hpp</a>></code><br />
<code>#include <<a class="el" href="dna15_8hpp_source.html">bio/alphabet/nucleotide/dna15.hpp</a>></code><br />
<code>#include <<a class="el" href="dna4_8hpp_source.html">bio/alphabet/nucleotide/dna4.hpp</a>></code><br />
<code>#include <<a class="el" href="dna5_8hpp_source.html">bio/alphabet/nucleotide/dna5.hpp</a>></code><br />
<code>#include <<a class="el" href="rna15_8hpp_source.html">bio/alphabet/nucleotide/rna15.hpp</a>></code><br />
<code>#include <<a class="el" href="rna4_8hpp_source.html">bio/alphabet/nucleotide/rna4.hpp</a>></code><br />
<code>#include <<a class="el" href="rna5_8hpp_source.html">bio/alphabet/nucleotide/rna5.hpp</a>></code><br />
<code>#include <<a class="el" href="alphabet_2quality_2concept_8hpp_source.html">bio/alphabet/quality/concept.hpp</a>></code><br />
<code>#include <<a class="el" href="phred42_8hpp_source.html">bio/alphabet/quality/phred42.hpp</a>></code><br />
<code>#include <<a class="el" href="qualified_8hpp_source.html">bio/alphabet/quality/qualified.hpp</a>></code><br />
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<p><a href="aliases_8hpp_source.html">Go to the source code of this file.</a></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
Namespaces</h2></td></tr>
<tr class="memitem:namespacebio"><td class="memItemLeft" align="right" valign="top">namespace  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebio.html">bio</a></td></tr>
<tr class="memdesc:namespacebio"><td class="mdescLeft"> </td><td class="mdescRight">The main BioC++ namespace. <br /></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:namespacebio_1_1alphabet"><td class="memItemLeft" align="right" valign="top">namespace  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebio_1_1alphabet.html">bio::alphabet</a></td></tr>
<tr class="memdesc:namespacebio_1_1alphabet"><td class="mdescLeft"> </td><td class="mdescRight">The alphabet module's namespace. <br /></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="typedef-members" name="typedef-members"></a>
Typedefs</h2></td></tr>
<tr class="memitem:ad5e656ee1491695573c945efa713a95d"><td class="memItemLeft" align="right" valign="top"><a id="ad5e656ee1491695573c945efa713a95d" name="ad5e656ee1491695573c945efa713a95d"></a>
using </td><td class="memItemRight" valign="bottom"><b>bio::alphabet::dna15q</b> = qualified< dna15, phred42 ></td></tr>
<tr class="memdesc:ad5e656ee1491695573c945efa713a95d"><td class="mdescLeft"> </td><td class="mdescRight">An alphabet that stores a <a class="el" href="classbio_1_1alphabet_1_1dna15.html" title="The 15 letter DNA alphabet, containing all IUPAC smybols minus the gap..">bio::alphabet::dna15</a> letter and an <a class="el" href="classbio_1_1alphabet_1_1qualified.html" title="Joins an arbitrary alphabet with a quality alphabet.">bio::alphabet::qualified</a> letter at each position. <br /></td></tr>
<tr class="separator:ad5e656ee1491695573c945efa713a95d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aee3aa5dc0944a8c475a5be966eb4b389"><td class="memItemLeft" align="right" valign="top"><a id="aee3aa5dc0944a8c475a5be966eb4b389" name="aee3aa5dc0944a8c475a5be966eb4b389"></a>
using </td><td class="memItemRight" valign="bottom"><b>bio::alphabet::dna4q</b> = qualified< dna4, phred42 ></td></tr>
<tr class="memdesc:aee3aa5dc0944a8c475a5be966eb4b389"><td class="mdescLeft"> </td><td class="mdescRight">An alphabet that stores a <a class="el" href="classbio_1_1alphabet_1_1dna4.html" title="The four letter DNA alphabet of A,C,G,T..">bio::alphabet::dna4</a> letter and an <a class="el" href="classbio_1_1alphabet_1_1phred42.html" title="Quality type for traditional Sanger and modern Illumina Phred scores (typical range)....">bio::alphabet::phred42</a> letter at each position. <br /></td></tr>
<tr class="separator:aee3aa5dc0944a8c475a5be966eb4b389"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a75fb9b7d161113029421a7e0d559b6f6"><td class="memItemLeft" align="right" valign="top"><a id="a75fb9b7d161113029421a7e0d559b6f6" name="a75fb9b7d161113029421a7e0d559b6f6"></a>
using </td><td class="memItemRight" valign="bottom"><b>bio::alphabet::dna5q</b> = qualified< dna5, phred42 ></td></tr>
<tr class="memdesc:a75fb9b7d161113029421a7e0d559b6f6"><td class="mdescLeft"> </td><td class="mdescRight">An alphabet that stores a <a class="el" href="classbio_1_1alphabet_1_1dna5.html" title="The five letter DNA alphabet of A,C,G,T and the unknown character N..">bio::alphabet::dna5</a> letter and an <a class="el" href="classbio_1_1alphabet_1_1phred42.html" title="Quality type for traditional Sanger and modern Illumina Phred scores (typical range)....">bio::alphabet::phred42</a> letter at each position. <br /></td></tr>
<tr class="separator:a75fb9b7d161113029421a7e0d559b6f6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3025f9f9c14e04ca2532df256e0a2d3a"><td class="memItemLeft" align="right" valign="top"><a id="a3025f9f9c14e04ca2532df256e0a2d3a" name="a3025f9f9c14e04ca2532df256e0a2d3a"></a>
using </td><td class="memItemRight" valign="bottom"><b>bio::alphabet::rna15q</b> = qualified< rna15, phred42 ></td></tr>
<tr class="memdesc:a3025f9f9c14e04ca2532df256e0a2d3a"><td class="mdescLeft"> </td><td class="mdescRight">An alphabet that stores a <a class="el" href="classbio_1_1alphabet_1_1rna15.html" title="The 15 letter RNA alphabet, containing all IUPAC smybols minus the gap..">bio::alphabet::rna15</a> letter and an <a class="el" href="classbio_1_1alphabet_1_1qualified.html" title="Joins an arbitrary alphabet with a quality alphabet.">bio::alphabet::qualified</a> letter at each position. <br /></td></tr>
<tr class="separator:a3025f9f9c14e04ca2532df256e0a2d3a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae752183f71604cbe30e27c9fdaf7a2a5"><td class="memItemLeft" align="right" valign="top"><a id="ae752183f71604cbe30e27c9fdaf7a2a5" name="ae752183f71604cbe30e27c9fdaf7a2a5"></a>
using </td><td class="memItemRight" valign="bottom"><b>bio::alphabet::rna4q</b> = qualified< rna4, phred42 ></td></tr>
<tr class="memdesc:ae752183f71604cbe30e27c9fdaf7a2a5"><td class="mdescLeft"> </td><td class="mdescRight">An alphabet that stores a <a class="el" href="classbio_1_1alphabet_1_1rna4.html" title="The four letter RNA alphabet of A,C,G,U..">bio::alphabet::rna4</a> letter and an <a class="el" href="classbio_1_1alphabet_1_1phred42.html" title="Quality type for traditional Sanger and modern Illumina Phred scores (typical range)....">bio::alphabet::phred42</a> letter at each position. <br /></td></tr>
<tr class="separator:ae752183f71604cbe30e27c9fdaf7a2a5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a310d5422eb8f67cb0b1ef07b7786e9d6"><td class="memItemLeft" align="right" valign="top"><a id="a310d5422eb8f67cb0b1ef07b7786e9d6" name="a310d5422eb8f67cb0b1ef07b7786e9d6"></a>
using </td><td class="memItemRight" valign="bottom"><b>bio::alphabet::rna5q</b> = qualified< rna5, phred42 ></td></tr>
<tr class="memdesc:a310d5422eb8f67cb0b1ef07b7786e9d6"><td class="mdescLeft"> </td><td class="mdescRight">An alphabet that stores a <a class="el" href="classbio_1_1alphabet_1_1rna5.html" title="The five letter RNA alphabet of A,C,G,U and the unknown character N..">bio::alphabet::rna5</a> letter and an <a class="el" href="classbio_1_1alphabet_1_1phred42.html" title="Quality type for traditional Sanger and modern Illumina Phred scores (typical range)....">bio::alphabet::phred42</a> letter at each position. <br /></td></tr>
<tr class="separator:a310d5422eb8f67cb0b1ef07b7786e9d6"><td class="memSeparator" colspan="2"> </td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Provides aliases for qualified. </p>
<dl class="section author"><dt>Author</dt><dd>Hannes Hauswedell <hannes.hauswedell AT decode.is> </dd></dl>
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