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<a href="aa10li_8hpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="comment">// -----------------------------------------------------------------------------------------------------</span></div>
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="comment">// Copyright (c) 2022 deCODE Genetics</span></div>
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="comment">// Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin</span></div>
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="comment">// Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik</span></div>
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="comment">// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License</span></div>
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="comment">// shipped with this file and also available at: https://github.com/biocpp/biocpp-core/blob/main/LICENSE.md</span></div>
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="comment">// -----------------------------------------------------------------------------------------------------</span></div>
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span> </div>
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="preprocessor">#pragma once</span></div>
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> </div>
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span><span class="preprocessor">#include <<a class="codeRef" target="_blank" href="https://en.cppreference.com/w/cpp/header/vector.html">vector</a>></span></div>
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span> </div>
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span><span class="preprocessor">#include <<a class="code" href="aminoacid__base_8hpp.html">bio/alphabet/aminoacid/aminoacid_base.hpp</a>></span></div>
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span><span class="preprocessor">#include <<a class="code" href="alphabet_2aminoacid_2concept_8hpp.html">bio/alphabet/aminoacid/concept.hpp</a>></span></div>
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span><span class="preprocessor">#include <bio/alphabet/detail/to_lower.hpp></span></div>
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> </div>
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"><a class="line" href="namespacebio.html"> 22</a></span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacebio_1_1alphabet.html">bio::alphabet</a></div>
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span>{</div>
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"><a class="line" href="classbio_1_1alphabet_1_1aa10li.html"> 81</a></span><span class="keyword">class </span><a class="code hl_class" href="classbio_1_1alphabet_1_1aa10li.html">aa10li</a> : <span class="keyword">public</span> <a class="code hl_class" href="classbio_1_1alphabet_1_1aminoacid__base.html">aminoacid_base</a><aa10li, 10></div>
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span>{</div>
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span><span class="keyword">private</span>:</div>
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> <span class="keyword">using </span><a class="code hl_class" href="classbio_1_1alphabet_1_1aminoacid__base.html">base_t</a> = <a class="code hl_class" href="classbio_1_1alphabet_1_1aminoacid__base.html">aminoacid_base<aa10li, 10></a>;</div>
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> </div>
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> <span class="keyword">friend</span> <a class="code hl_class" href="classbio_1_1alphabet_1_1aminoacid__base.html">base_t</a>;</div>
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> <span class="keyword">friend</span> <a class="code hl_class" href="classbio_1_1alphabet_1_1base.html">base_t::base_t</a>;</div>
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span> </div>
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span><span class="keyword">public</span>:</div>
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"><a class="line" href="classbio_1_1alphabet_1_1aa10li.html#a526dabbf030519038bc7605b94c809a1"> 97</a></span> <span class="keyword">constexpr</span> <a class="code hl_function" href="classbio_1_1alphabet_1_1aa10li.html#a526dabbf030519038bc7605b94c809a1">aa10li</a>() noexcept = default; </div>
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"><a class="line" href="classbio_1_1alphabet_1_1aa10li.html#ac076061bfefd9d5f528de75a60bf2fc7"> 98</a></span> constexpr <a class="code hl_class" href="classbio_1_1alphabet_1_1aa10li.html">aa10li</a>(<a class="code hl_class" href="classbio_1_1alphabet_1_1aa10li.html">aa10li</a> const &) noexcept = default; </div>
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"><a class="line" href="classbio_1_1alphabet_1_1aa10li.html#a9d4043931bb36ded4acd739638b16b4e"> 99</a></span> constexpr <a class="code hl_class" href="classbio_1_1alphabet_1_1aa10li.html">aa10li</a>(<a class="code hl_class" href="classbio_1_1alphabet_1_1aa10li.html">aa10li</a> &&) noexcept = default; </div>
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"><a class="line" href="classbio_1_1alphabet_1_1aa10li.html#ad4c79237590819bbff665957b033971d"> 100</a></span> constexpr <a class="code hl_class" href="classbio_1_1alphabet_1_1aa10li.html">aa10li</a> & operator=(<a class="code hl_class" href="classbio_1_1alphabet_1_1aa10li.html">aa10li</a> const &) noexcept = default; </div>
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"><a class="line" href="classbio_1_1alphabet_1_1aa10li.html#a486eeb6dea2f348978ad46da63707daf"> 101</a></span> constexpr <a class="code hl_class" href="classbio_1_1alphabet_1_1aa10li.html">aa10li</a> & operator=(<a class="code hl_class" href="classbio_1_1alphabet_1_1aa10li.html">aa10li</a> &&) noexcept = default; </div>
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"><a class="line" href="classbio_1_1alphabet_1_1aa10li.html#aac1d535f45e5f540694146e26962e12b"> 102</a></span> ~<a class="code hl_class" href="classbio_1_1alphabet_1_1aa10li.html">aa10li</a>() noexcept = default; </div>
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> </div>
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> using <a class="code hl_class" href="classbio_1_1alphabet_1_1aminoacid__base.html">base_t</a>::<a class="code hl_class" href="classbio_1_1alphabet_1_1aminoacid__base.html">base_t</a>;</div>
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> </div>
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span>protected:</div>
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"><a class="line" href="classbio_1_1alphabet_1_1aa10li.html#a3534c5b181582171b3c21298d1a07ad4"> 110</a></span> static constexpr <a class="code hl_namespaceRef" target="_blank" href="https://en.cppreference.com/w/namespacestd.html">std</a>::array<<a class="code hl_classRef" target="_blank" href="https://en.cppreference.com/w/cpp/types/conditional.html">char_type</a>, <a class="code hl_variable" href="classbio_1_1alphabet_1_1base.html#a834f007f409b2761dc774fc45e457b11">alphabet_size</a>> <a class="code hl_variable" href="classbio_1_1alphabet_1_1aa10li.html#a3534c5b181582171b3c21298d1a07ad4">rank_to_char</a>{</div>
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> <span class="charliteral">'A'</span>,</div>
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span> <span class="charliteral">'B'</span>,</div>
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> <span class="charliteral">'C'</span>,</div>
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span> <span class="charliteral">'F'</span>,</div>
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> <span class="charliteral">'G'</span>,</div>
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> <span class="charliteral">'H'</span>,</div>
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> <span class="charliteral">'I'</span>,</div>
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> <span class="charliteral">'J'</span>,</div>
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span> <span class="charliteral">'K'</span>,</div>
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span> <span class="charliteral">'P'</span>,</div>
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span> };</div>
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> </div>
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"><a class="line" href="classbio_1_1alphabet_1_1aa10li.html#ac5b21f2011f0b1c66ace34c894d2c04b"> 124</a></span> <span class="keyword">static</span> <span class="keyword">constexpr</span> <a class="code hl_classRef" target="_blank" href="https://en.cppreference.com/w/cpp/container/array.html">std::array<rank_type, 256></a> <a class="code hl_variable" href="classbio_1_1alphabet_1_1aa10li.html#ac5b21f2011f0b1c66ace34c894d2c04b">char_to_rank</a> = []() <span class="keyword">constexpr</span></div>
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> {</div>
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> <a class="code hl_classRef" target="_blank" href="https://en.cppreference.com/w/cpp/container/array.html">std::array<rank_type, 256></a> ret{};</div>
<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"> 127</span> </div>
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> <span class="comment">// reverse mapping for characters and their lowercase</span></div>
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> <span class="keywordflow">for</span> (<a class="code hl_classRef" target="_blank" href="https://en.cppreference.com/w/cpp/types/conditional.html">rank_type</a> rnk = 0u; rnk < <a class="code hl_variable" href="classbio_1_1alphabet_1_1base.html#a834f007f409b2761dc774fc45e457b11">alphabet_size</a>; ++rnk)</div>
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span> {</div>
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span> ret[<span class="keyword">static_cast<</span><a class="code hl_classRef" target="_blank" href="https://en.cppreference.com/w/cpp/types/conditional.html">rank_type</a><span class="keyword">></span>(<a class="code hl_variable" href="classbio_1_1alphabet_1_1aa10li.html#a3534c5b181582171b3c21298d1a07ad4">rank_to_char</a>[rnk])] = rnk;</div>
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span> ret[<span class="keyword">static_cast<</span><a class="code hl_classRef" target="_blank" href="https://en.cppreference.com/w/cpp/types/conditional.html">rank_type</a><span class="keyword">></span>(detail::to_lower(<a class="code hl_variable" href="classbio_1_1alphabet_1_1aa10li.html#a3534c5b181582171b3c21298d1a07ad4">rank_to_char</a>[rnk]))] = rnk;</div>
<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"> 133</span> }</div>
<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span> </div>
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"> 135</span> ret[<span class="charliteral">'D'</span>] = ret[<span class="charliteral">'B'</span>];</div>
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span> ret[<span class="charliteral">'d'</span>] = ret[<span class="charliteral">'B'</span>]; <span class="comment">// Convert D to B (either D/N).</span></div>
<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"> 137</span> ret[<span class="charliteral">'E'</span>] = ret[<span class="charliteral">'B'</span>];</div>
<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span> ret[<span class="charliteral">'e'</span>] = ret[<span class="charliteral">'B'</span>]; <span class="comment">// Convert E to B (either D/N).</span></div>
<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"> 139</span> ret[<span class="charliteral">'L'</span>] = ret[<span class="charliteral">'J'</span>];</div>
<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"> 140</span> ret[<span class="charliteral">'l'</span>] = ret[<span class="charliteral">'J'</span>]; <span class="comment">// Convert L to J (either I/L).</span></div>
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span> ret[<span class="charliteral">'M'</span>] = ret[<span class="charliteral">'J'</span>];</div>
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span> ret[<span class="charliteral">'m'</span>] = ret[<span class="charliteral">'J'</span>]; <span class="comment">// Convert M to J (either I/L).</span></div>
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span> ret[<span class="charliteral">'N'</span>] = ret[<span class="charliteral">'H'</span>];</div>
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"> 144</span> ret[<span class="charliteral">'n'</span>] = ret[<span class="charliteral">'H'</span>]; <span class="comment">// Convert N to H.</span></div>
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span> ret[<span class="charliteral">'O'</span>] = ret[<span class="charliteral">'K'</span>];</div>
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span> ret[<span class="charliteral">'o'</span>] = ret[<span class="charliteral">'K'</span>]; <span class="comment">// Convert Pyrrolysine to K.</span></div>
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"> 147</span> ret[<span class="charliteral">'Q'</span>] = ret[<span class="charliteral">'B'</span>];</div>
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span> ret[<span class="charliteral">'q'</span>] = ret[<span class="charliteral">'B'</span>]; <span class="comment">// Convert Q to B (either D/N).</span></div>
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"> 149</span> ret[<span class="charliteral">'R'</span>] = ret[<span class="charliteral">'K'</span>];</div>
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span> ret[<span class="charliteral">'r'</span>] = ret[<span class="charliteral">'K'</span>]; <span class="comment">// Convert R to K.</span></div>
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span> ret[<span class="charliteral">'S'</span>] = ret[<span class="charliteral">'A'</span>];</div>
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span> ret[<span class="charliteral">'s'</span>] = ret[<span class="charliteral">'A'</span>]; <span class="comment">// Convert S to A.</span></div>
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span> ret[<span class="charliteral">'T'</span>] = ret[<span class="charliteral">'A'</span>];</div>
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> ret[<span class="charliteral">'t'</span>] = ret[<span class="charliteral">'A'</span>]; <span class="comment">// Convert T to A.</span></div>
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span> ret[<span class="charliteral">'U'</span>] = ret[<span class="charliteral">'C'</span>];</div>
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span> ret[<span class="charliteral">'u'</span>] = ret[<span class="charliteral">'C'</span>]; <span class="comment">// Convert Selenocysteine to C.</span></div>
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span> ret[<span class="charliteral">'V'</span>] = ret[<span class="charliteral">'I'</span>];</div>
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span> ret[<span class="charliteral">'v'</span>] = ret[<span class="charliteral">'I'</span>]; <span class="comment">// Convert V to I.</span></div>
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span> ret[<span class="charliteral">'W'</span>] = ret[<span class="charliteral">'F'</span>];</div>
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span> ret[<span class="charliteral">'w'</span>] = ret[<span class="charliteral">'F'</span>]; <span class="comment">// Convert W to F.</span></div>
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span> ret[<span class="charliteral">'X'</span>] = ret[<span class="charliteral">'A'</span>];</div>
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span> ret[<span class="charliteral">'x'</span>] = ret[<span class="charliteral">'A'</span>]; <span class="comment">// Convert unknown amino acids to Alanine.</span></div>
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span> ret[<span class="charliteral">'Y'</span>] = ret[<span class="charliteral">'F'</span>];</div>
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> ret[<span class="charliteral">'y'</span>] = ret[<span class="charliteral">'F'</span>]; <span class="comment">// Convert Y to F.</span></div>
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span> ret[<span class="charliteral">'Z'</span>] = ret[<span class="charliteral">'B'</span>];</div>
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span> ret[<span class="charliteral">'z'</span>] = ret[<span class="charliteral">'B'</span>]; <span class="comment">// Convert Z (either E/Q) to B (either D/N).</span></div>
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span> ret[<span class="charliteral">'*'</span>] = ret</div>
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span> [<span class="charliteral">'F'</span>]; <span class="comment">// The most common stop codon is UGA. This is most similar to a Tryptophan which in this alphabet gets converted to Phenylalanine.</span></div>
<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span> <span class="keywordflow">return</span> ret;</div>
<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span> }();</div>
<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"> 171</span>};</div>
<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span> </div>
<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span>} <span class="comment">// namespace bio::alphabet</span></div>
<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span> </div>
<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span><span class="comment">// ------------------------------------------------------------------</span></div>
<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"> 176</span><span class="comment">// literals</span></div>
<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span><span class="comment">// ------------------------------------------------------------------</span></div>
<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"> 178</span> </div>
<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacebio_1_1alphabet.html">bio::alphabet</a></div>
<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span>{</div>
<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> </div>
<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"><a class="line" href="namespacebio_1_1alphabet_1_1literals.html"> 182</a></span><span class="keyword">inline</span> <span class="keyword">namespace </span>literals</div>
<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span>{</div>
<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span> </div>
<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"><a class="line" href="classbio_1_1alphabet_1_1aa10li.html#ad8a66a6331334584e7d70bfef9d8ee3d"> 193</a></span><span class="keyword">consteval</span> <a class="code hl_class" href="classbio_1_1alphabet_1_1aa10li.html">aa10li</a> <span class="keyword">operator</span><span class="stringliteral">""</span>_aa10li(<span class="keywordtype">char</span> <span class="keyword">const</span> c)</div>
<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span>{</div>
<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> <span class="keywordflow">if</span> (!char_is_valid_for<aa10li>(c))</div>
<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> <span class="keywordflow">throw</span> <a class="code hl_classRef" target="_blank" href="https://en.cppreference.com/w/cpp/error/invalid_argument.html">std::invalid_argument</a>{<span class="stringliteral">"Illegal character in character literal."</span>};</div>
<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> </div>
<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> <span class="keywordflow">return</span> <a class="code hl_class" href="classbio_1_1alphabet_1_1aa10li.html">aa10li</a>{}.<a class="code hl_function" href="classbio_1_1alphabet_1_1base.html#a9dfef1259c4c0112e490255343de0d2f">assign_char</a>(c);</div>
<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span>}</div>
<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> </div>
<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"> 210</span><span class="keyword">template</span> <meta::detail::literal_buffer_<span class="keywordtype">string</span> str></div>
<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"><a class="line" href="classbio_1_1alphabet_1_1aa10li.html#a839b0da93a06931cb1eaedab72c65884"> 211</a></span><span class="keyword">constexpr</span> <a class="code hl_classRef" target="_blank" href="https://en.cppreference.com/w/cpp/container/vector.html">std::vector<aa10li></a> <span class="keyword">operator</span><span class="stringliteral">""</span>_aa10li()</div>
<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span>{</div>
<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"> 213</span> <span class="keywordflow">return</span> detail::string_literal<str, aa10li>();</div>
<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"> 214</span>}</div>
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"> 216</span> </div>
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span>} <span class="comment">// namespace literals</span></div>
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> </div>
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span>} <span class="comment">// namespace bio::alphabet</span></div>
<div class="ttc" id="aalphabet_2aminoacid_2concept_8hpp_html"><div class="ttname"><a href="alphabet_2aminoacid_2concept_8hpp.html">concept.hpp</a></div><div class="ttdoc">Provides bio::alphabet::aminoacid.</div></div>
<div class="ttc" id="aaminoacid__base_8hpp_html"><div class="ttname"><a href="aminoacid__base_8hpp.html">aminoacid_base.hpp</a></div><div class="ttdoc">Provides bio::alphabet::aminoacid_base.</div></div>
<div class="ttc" id="aarray_html"><div class="ttname"><a href="https://en.cppreference.com/w/cpp/container/array.html">std::array</a></div></div>
<div class="ttc" id="aclassbio_1_1alphabet_1_1aa10li_html"><div class="ttname"><a href="classbio_1_1alphabet_1_1aa10li.html">bio::alphabet::aa10li</a></div><div class="ttdoc">The reduced Li amino acid alphabet..</div><div class="ttdef"><b>Definition:</b> aa10li.hpp:82</div></div>
<div class="ttc" id="aclassbio_1_1alphabet_1_1aa10li_html_a3534c5b181582171b3c21298d1a07ad4"><div class="ttname"><a href="classbio_1_1alphabet_1_1aa10li.html#a3534c5b181582171b3c21298d1a07ad4">bio::alphabet::aa10li::rank_to_char</a></div><div class="ttdeci">static constexpr std::array< char_type, alphabet_size > rank_to_char</div><div class="ttdoc">Value to char conversion table.</div><div class="ttdef"><b>Definition:</b> aa10li.hpp:110</div></div>
<div class="ttc" id="aclassbio_1_1alphabet_1_1aa10li_html_a526dabbf030519038bc7605b94c809a1"><div class="ttname"><a href="classbio_1_1alphabet_1_1aa10li.html#a526dabbf030519038bc7605b94c809a1">bio::alphabet::aa10li::aa10li</a></div><div class="ttdeci">constexpr aa10li() noexcept=default</div><div class="ttdoc">Defaulted.</div></div>
<div class="ttc" id="aclassbio_1_1alphabet_1_1aa10li_html_ac5b21f2011f0b1c66ace34c894d2c04b"><div class="ttname"><a href="classbio_1_1alphabet_1_1aa10li.html#ac5b21f2011f0b1c66ace34c894d2c04b">bio::alphabet::aa10li::char_to_rank</a></div><div class="ttdeci">static constexpr std::array< rank_type, 256 > char_to_rank</div><div class="ttdoc">Char to value conversion table.</div><div class="ttdef"><b>Definition:</b> aa10li.hpp:124</div></div>
<div class="ttc" id="aclassbio_1_1alphabet_1_1aminoacid__base_html"><div class="ttname"><a href="classbio_1_1alphabet_1_1aminoacid__base.html">bio::alphabet::aminoacid_base</a></div><div class="ttdoc">A CRTP-base that refines bio::alphabet::base and is used by the amino acids.</div><div class="ttdef"><b>Definition:</b> aminoacid_base.hpp:31</div></div>
<div class="ttc" id="aclassbio_1_1alphabet_1_1base_html"><div class="ttname"><a href="classbio_1_1alphabet_1_1base.html">bio::alphabet::base< aa10li, size, char ></a></div></div>
<div class="ttc" id="aclassbio_1_1alphabet_1_1base_html_a834f007f409b2761dc774fc45e457b11"><div class="ttname"><a href="classbio_1_1alphabet_1_1base.html#a834f007f409b2761dc774fc45e457b11">bio::alphabet::base::alphabet_size</a></div><div class="ttdeci">static constexpr size_t alphabet_size</div><div class="ttdoc">The size of the alphabet, i.e. the number of different values it can take.</div><div class="ttdef"><b>Definition:</b> base.hpp:177</div></div>
<div class="ttc" id="aclassbio_1_1alphabet_1_1base_html_a9dfef1259c4c0112e490255343de0d2f"><div class="ttname"><a href="classbio_1_1alphabet_1_1base.html#a9dfef1259c4c0112e490255343de0d2f">bio::alphabet::base::assign_char</a></div><div class="ttdeci">constexpr derived_type & assign_char(char_type const c) noexcept</div><div class="ttdoc">Assign from a character, implicitly converts invalid characters.</div><div class="ttdef"><b>Definition:</b> base.hpp:145</div></div>
<div class="ttc" id="aconditional_html"><div class="ttname"><a href="https://en.cppreference.com/w/cpp/types/conditional.html">std::conditional_t</a></div></div>
<div class="ttc" id="ainvalid_argument_html"><div class="ttname"><a href="https://en.cppreference.com/w/cpp/error/invalid_argument.html">std::invalid_argument</a></div></div>
<div class="ttc" id="anamespacebio_1_1alphabet_html"><div class="ttname"><a href="namespacebio_1_1alphabet.html">bio::alphabet</a></div><div class="ttdoc">The alphabet module's namespace.</div><div class="ttdef"><b>Definition:</b> aa10li.hpp:23</div></div>
<div class="ttc" id="anamespacestd_html"><div class="ttname"><a href="https://en.cppreference.com/w/namespacestd.html">std</a></div></div>
<div class="ttc" id="avector_html"><div class="ttname"><a href="https://en.cppreference.com/w/cpp/header/vector.html">vector</a></div></div>
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