Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

patch threshold and entropy #65

Open
shkeum21 opened this issue Feb 17, 2023 · 2 comments
Open

patch threshold and entropy #65

shkeum21 opened this issue Feb 17, 2023 · 2 comments

Comments

@shkeum21
Copy link

shkeum21 commented Feb 17, 2023

Dear Binli.

First of all, I want to say that your paper and repository is contributing a lot to the development of WSI ml area. Your code implementation is much easier to understand and implement than others. Thanks :)

By the way, I'm little confused with the deepzoom_tiler.py args 'background_t' and your description in paper 'entropy'.
IS filtering background with background_t = 15 same as entropy=5? Is there any formula for exchanging background_t and entropy?

Also, by using background_t = 15, i got more patches than expected.
Would you offer us the exact background_t for tcga and camelyon? If it is confidential, just let us know the 'good' range of background_t for both datasets.

Have a good day :)

@yogawicaksana
Copy link

yogawicaksana commented Mar 17, 2023

Hi,
Have you figure it out this one? Is the background_t=15 same as entropy=5?

Thank you

@shkeum21
Copy link
Author

No, I'm just waiting for the reply from author @binli123

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants