Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

What is the origin when exporting an image using the multiview fusion plugin. #139

Closed
odinsbane opened this issue May 25, 2022 · 1 comment

Comments

@odinsbane
Copy link

This is related to, the same issue as this fiji/SPIM_Registration#138

I have a dataset that has been prepared for me and I want to make a fusion. When I make the fusion with the following bounding box.

Bounding Boxes:
Tile_7 (dim=265x260x373px, offset=156x258x159px)

If I don't use any binning. Then the resulting image has

voxel 0.175um x 0.175um x 0.175um
dimension(px) 265, 260, 373
origin(?) -27.16,-44.91,-27.68

If I use downsampling 2, then the resulting image is
voxel 0.35um x 0.35um x 0.35um
dimensions(px) 133, 131, 187
origin -13.58,-22.46,-13.84

From the looks of it, the origin is a scaled unit. ie the x coodinate is 0.175*156. Except it scales with downsampling as though it is in pixels?

@odinsbane
Copy link
Author

The other issue is more appropriate.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant