diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala
index 29e88c7..b12a8d1 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala
@@ -35,8 +35,8 @@ class BcftoolsCallArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.")
   var executable: String = "bcftools"
 
-  @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.14--h88f3f91_0.")
-  var image: String = "quay.io/biocontainers/bcftools:1.14--h88f3f91_0"
+  @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.14--hde04aa1_1.")
+  var image: String = "quay.io/biocontainers/bcftools:1.14--hde04aa1_1"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala
index 3c12bc6..dd80ae1 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala
@@ -36,8 +36,8 @@ class BcftoolsMpileupArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.")
   var executable: String = "bcftools"
 
-  @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.14--h88f3f91_0.")
-  var image: String = "quay.io/biocontainers/bcftools:1.14--h88f3f91_0"
+  @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.14--hde04aa1_1.")
+  var image: String = "quay.io/biocontainers/bcftools:1.14--hde04aa1_1"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala
index 9e340d2..3b68508 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala
@@ -39,8 +39,8 @@ class BcftoolsNormArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.")
   var executable: String = "bcftools"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.14--h88f3f91_0.")
-  var image: String = "quay.io/biocontainers/bcftools:1.14--h88f3f91_0"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.14--hde04aa1_1.")
+  var image: String = "quay.io/biocontainers/bcftools:1.14--hde04aa1_1"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala b/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala
index 7bafdbc..9092679 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala
@@ -47,8 +47,8 @@ class BedtoolsIntersectArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the Bedtools executable. Defaults to bedtools.")
   var executable: String = "bedtools"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bedtools:2.30.0--hc088bd4_0.")
-  var image: String = "quay.io/biocontainers/bedtools:2.30.0--hc088bd4_0"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bedtools:2.30.0--h7d7f7ad_2.")
+  var image: String = "quay.io/biocontainers/bedtools:2.30.0--h7d7f7ad_2"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala b/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala
index ec80a4a..91488d6 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala
@@ -37,8 +37,8 @@ class BlastnArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the blastn executable. Defaults to blastn.")
   var executable: String = "blastn"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/blast:2.11.0--pl526he19e7b1_0.")
-  var image: String = "quay.io/biocontainers/blast:2.11.0--pl526he19e7b1_0"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/blast:2.12.0--pl5262h3289130_0.")
+  var image: String = "quay.io/biocontainers/blast:2.12.0--pl5262h3289130_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala b/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala
index b0c4f43..ece0c07 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala
@@ -35,8 +35,8 @@ class BowtieArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the Bowtie executable. Defaults to bowtie.")
   var executable: String = "bowtie"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bowtie:1.3.1--py39h176da8b_0.")
-  var image: String = "quay.io/biocontainers/bowtie:1.3.1--py39h176da8b_0"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bowtie:1.3.1--py38hcf49a77_0.")
+  var image: String = "quay.io/biocontainers/bowtie:1.3.1--py38hcf49a77_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala b/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala
index d0a1f2f..7ba7b7d 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala
@@ -38,8 +38,8 @@ class BwaMemArgs extends ReadGroupArgs {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the BWA executable. Defaults to bwa.")
   var executable: String = "bwa"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bwa:0.7.17--hed695b0_7.")
-  var image: String = "quay.io/biocontainers/bwa:0.7.17--hed695b0_7"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bwa:0.7.17--h5bf99c6_8.")
+  var image: String = "quay.io/biocontainers/bwa:0.7.17--h5bf99c6_8"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BwaMem2.scala b/core/src/main/scala/org/bdgenomics/cannoli/BwaMem2.scala
index 1d71396..1c78021 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/BwaMem2.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/BwaMem2.scala
@@ -38,8 +38,8 @@ class BwaMem2Args extends ReadGroupArgs {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the Bwa-mem2 executable. Defaults to bwa-mem2.")
   var executable: String = "bwa-mem2"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bwa-mem2:2.2.1--he513fc3_0.")
-  var image: String = "quay.io/biocontainers/bwa-mem2:2.2.1--he513fc3_0"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bwa-mem2:2.2.1--h9a82719_1.")
+  var image: String = "quay.io/biocontainers/bwa-mem2:2.2.1--h9a82719_1"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/Freebayes.scala b/core/src/main/scala/org/bdgenomics/cannoli/Freebayes.scala
index 72c2e3e..f9f19ec 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/Freebayes.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/Freebayes.scala
@@ -36,8 +36,8 @@ class FreebayesArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the Freebayes executable. Defaults to freebayes.")
   var executable: String = "freebayes"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/freebayes:1.3.5--py38hcc087cc_2.")
-  var image: String = "quay.io/biocontainers/freebayes:1.3.5--py38hcc087cc_2"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/freebayes:1.3.5--py38h8367b0b_4.")
+  var image: String = "quay.io/biocontainers/freebayes:1.3.5--py38h8367b0b_4"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/MagicBlast.scala b/core/src/main/scala/org/bdgenomics/cannoli/MagicBlast.scala
index 08d80c9..ff74f48 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/MagicBlast.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/MagicBlast.scala
@@ -37,8 +37,8 @@ class MagicBlastArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the Magic-BLAST executable. Defaults to magicblast.")
   var executable: String = "magicblast"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/magicblast:1.5.0--h2d02072_0.")
-  var image: String = "quay.io/biocontainers/magicblast:1.5.0--h2d02072_0"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/magicblast:1.6.0--h95f258a_0.")
+  var image: String = "quay.io/biocontainers/magicblast:1.6.0--h95f258a_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/Minimap2.scala b/core/src/main/scala/org/bdgenomics/cannoli/Minimap2.scala
index 7c19a78..f7781ae 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/Minimap2.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/Minimap2.scala
@@ -36,8 +36,8 @@ class Minimap2Args extends ReadGroupArgs {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the Minimap2 executable. Defaults to minimap2.")
   var executable: String = "minimap2"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/minimap2:2.22--h5bf99c6_0.")
-  var image: String = "quay.io/biocontainers/minimap2:2.22--h5bf99c6_0"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/minimap2:2.24--h5bf99c6_0.")
+  var image: String = "quay.io/biocontainers/minimap2:2.24--h5bf99c6_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/Star.scala b/core/src/main/scala/org/bdgenomics/cannoli/Star.scala
index 332da05..0032b6f 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/Star.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/Star.scala
@@ -35,8 +35,8 @@ class StarArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the STAR-Mapper executable. Defaults to STAR.")
   var executable: String = "STAR"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/star:2.7.9a--h9ee0642_0.")
-  var image: String = "quay.io/biocontainers/star:2.7.9a--h9ee0642_0"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/star:2.7.10a--h9ee0642_0.")
+  var image: String = "quay.io/biocontainers/star:2.7.10a--h9ee0642_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/Vep.scala b/core/src/main/scala/org/bdgenomics/cannoli/Vep.scala
index 0ee0e6e..83e7516 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/Vep.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/Vep.scala
@@ -39,8 +39,8 @@ class VepArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the Ensembl VEP executable. Defaults to vep.")
   var executable: String = "vep"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/ensembl-vep:103.1--pl526hecda079_0.")
-  var image: String = "quay.io/biocontainers/ensembl-vep:103.1--pl526hecda079_0"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/ensembl-vep:105.0--pl5262h4a94de4_0.")
+  var image: String = "quay.io/biocontainers/ensembl-vep:105.0--pl5262h4a94de4_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/VtNormalize.scala b/core/src/main/scala/org/bdgenomics/cannoli/VtNormalize.scala
index 930fe23..5a58ed1 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/VtNormalize.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/VtNormalize.scala
@@ -39,8 +39,8 @@ class VtNormalizeArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the vt executable. Defaults to vt.")
   var executable: String = "vt"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/vt:0.57721--h41af197_4.")
-  var image: String = "quay.io/biocontainers/vt:0.57721--h41af197_4"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/vt:0.57721--hf1e2573_5.")
+  var image: String = "quay.io/biocontainers/vt:0.57721--hf1e2573_5"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false