From bc85ee4576ebefc3860341fb8ef5fcea188a5c1f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ren=C3=A9?= Date: Fri, 2 Feb 2024 13:22:33 -0800 Subject: [PATCH] Update README.md --- README.md | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 81cb12c..94bd0bb 100644 --- a/README.md +++ b/README.md @@ -256,13 +256,17 @@ If the run is successful, the -unique.fa FASTA output should contain 5 sequences 2. Unzip all FASTA files (gunzip *.fa.gz) on unix -Note: In version 1.3.4 and subsequent, unikseq-Bloom.pl supports .zip and .gz FASTA files directly (i.e., no need to uncompressed before running unikseq-Bloom.pl) +Note: In version 1.3.4 and subsequent, unikseq-Bloom.pl supports .zip and .gz FASTA files directly (i.e., no need to uncompressed before running) -3. Generate Bloom filters from in/outgroup (uncompressed) FASTA files +3. Generate Bloom filters from in/outgroup FASTA files writeBloom.pl -f shark.fa writeBloom.pl -f teleost.fa +---or--- +writeBloom.pl -f shark.fa.gz +writeBloom.pl -f teleost.fa.gz + These commands will write two output files: shark.fa_k25_p0.001_rolling.bloom