pyproject.toml

[project]
name = "exps"
version = "1.10.1"
dependencies = [
  "amltk",
  "matplotlib",   # Better iteration
  "openml",       # Used for process termination of executors
  "scikit-learn",
  "pyQt5",
  "smac",
  "seaborn",
  "pandas",
  "rich",
  "ConfigSpace",
  "numpy",
  "more-itertools",
  "typing_extensions",
  "scipy",
  "pyQT6",
]
requires-python = ">=3.10"
authors = [{ name = "Anon", email = "Anon@anon.com" }]
readme = "README.md"
description = "Experiments for pipeline design"

# https://docs.pytest.org/en/7.2.x/reference/reference.html#ini-options-ref
[tool.pytest.ini_options]
testpaths = ["tests"]
minversion = "7.0"
empty_parameter_set_mark = "xfail"
log_cli = false
log_level = "DEBUG"
xfail_strict = true
addopts = "--durations=10 -vv"
markers = ["example: An example"]

[tool.coverage.report]
show_missing = true
skip_covered = true
exclude_lines = [
  "pragma: no cover",
  '\.\.\.',
  "raise NotImplementedError",
  "if TYPE_CHECKING",
]

[tool.commitizen]
name = "cz_conventional_commits"
version = "1.10.1"
update_changelog_on_bump = true
version_files = ["pyproject.toml:version"]
changelog_start_rev = "1.0.0"

# https://github.com/charliermarsh/ruff
[tool.ruff]
target-version = "py310"
line-length = 88
show-source = true
src = ["src", "tests", "examples"]
extend-safe-fixes = ["ALL"]

# Allow unused variables when underscore-prefixed.
dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"

select = [
  "A",
  # "ANN", # Handled by mypy
  "ARG",
  "B",
  "BLE",
  "COM",
  "C4",
  "D",
  # "DTZ",  # One day I should know how to utilize timezones and dates...
  "E",
  # "EXE", Meh
  "ERA",
  "F",
  "FBT",
  "I",
  # "ISC",  # Favours implicit string concatenation
  "INP",
  # "INT", # I don't understand this one
  "N",
  "NPY",
  "PD",
  "PLC",
  "PLE",
  "PLR",
  "PLW",
  "PIE",
  "PT",
  "PTH",
  # "PYI", # Specific to .pyi files for type stubs
  "Q",
  "PGH004",
  "RET",
  "RUF",
  "C90",
  "S",
  # "SLF",    # Private member accessed (sure, it's python)
  "SIM",
  # "TRY", # Good in principle, would take a lot of work to statisfy
  "T10",
  "T20",
  "TID",
  "TCH",
  "UP",
  "N",
  "W",
  "YTT",
]

ignore = [
  "D100",
  "D101",
  "D102",
  "D103",
  "D104",    # Missing docstring in public package
  "D105",    # Missing docstring in magic mthod
  "D203",    # 1 blank line required before class docstring
  "D205",    # 1 blank line between summary and description
  "D401",    # First line of docstring should be in imperative mood
  "N806",    # Variable X in function should be lowercase
  "E731",    # Do not assign a lambda expression, use a def
  "A003",    # Shadowing a builtin
  "S101",    # Use of assert detected.
  "W292",    # No newline at end of file
  "PLC1901", # "" can be simplified to be falsey
  "TCH003",  # Move stdlib import into TYPE_CHECKING
  "B010",    # Do not use `setattr`
  "PD011",   # Use .to_numpy() instead of .values  (triggers on report.values)
  "T201",
  # These tend to be lighweight and confuse pyright
]

exclude = [
  ".bzr",
  ".direnv",
  ".eggs",
  ".git",
  ".hg",
  ".mypy_cache",
  ".nox",
  ".pants.d",
  ".ruff_cache",
  ".svn",
  ".tox",
  ".venv",
  "__pypackages__",
  "_build",
  "buck-out",
  "build",
  "dist",
  "node_modules",
  "venv",
  "docs",
]

# Exclude a variety of commonly ignored directories.
[tool.ruff.per-file-ignores]
"tests/*.py" = [
  "S101",
  "D103",
  "ANN001",
  "ANN201",
  "FBT001",
  "D100",
  "PLR2004",
  "PD901",   #  X is a bad variable name. (pandas)
  "TCH",
  "N803",
  "C901",    # Too complex
]


[tool.ruff.isort]
known-first-party = ["exps"]
known-third-party = ["sklearn"]
no-lines-before = ["future"]
required-imports = ["from __future__ import annotations"]
combine-as-imports = true
extra-standard-library = ["typing_extensions"]
force-wrap-aliases = true

[tool.ruff.pydocstyle]
convention = "google"

[tool.ruff.pylint]
max-args = 10 # Changed from default of 5

[tool.mypy]
python_version = "3.10"
packages = ["src/exps", "tests"]

show_error_codes = true

warn_unused_configs = true # warn about unused [tool.mypy] lines

follow_imports = "normal"      # Type check top level api code we use from imports
ignore_missing_imports = false # prefer explicit ignores

disallow_untyped_defs = true       # All functions must have types
disallow_untyped_decorators = true # ... even decorators
disallow_incomplete_defs = true    # ...all types

no_implicit_optional = true
check_untyped_defs = true

warn_return_any = true


[[tool.mypy.overrides]]
module = ["tests.*"]
disallow_untyped_defs = false          # Sometimes we just want to ignore verbose types
disallow_untyped_decorators = false    # Test decorators are not properly typed
disallow_incomplete_defs = false       # Sometimes we just want to ignore verbose types
disable_error_code = ["var-annotated"]

[[tool.mypy.overrides]]
module = [
  "sklearn.*",
  "ConfigSpace.*",
  "pandas.*",
  "more_itertools.*",
  "dask_jobqueue.*",
  "wandb.*",
  "threadpoolctl.*",
  "loky.*",
  "metahyper.*",
  "neps.*",
]
ignore_missing_imports = true

[tool.pyright]
include = ["src", "tests"]

pythonVersion = "3.10"
typeCheckingMode = "strict"

strictListInference = true
strictSetInference = true
strictDictionaryInference = false
reportImportCycles = false
reportMissingSuperCall = true
reportMissingTypeArgument = false
reportOverlappingOverload = true
reportIncompatibleVariableOverride = true
reportIncompatibleMethodOverride = true
reportConstantRedefinition = true
reportInvalidTypeVarUse = true
reportCallInDefaultInitializer = true
reportImplicitOverride = true
reportUnknownMemberType = false
reportUnknownParameterType = false
reportUnknownVariableType = false
reportUnknownArgumentType = false
reportUnknownLambdaType = false
reportPrivateUsage = false
reportUnnecessaryCast = false
reportUnusedFunction = false
reportMissingTypeStubs = false
reportPrivateImportUsage = false