Depending on which company performed your genotyping, your sample might be missing information for some of the 55 (or 128) AISNPs.
-
To show a table of your genotypes at the AISNP locations, check Show Your Genotypes.
-
To show a table of the 1000 genomes samples genotypes at the AISNP locations, check Show 1k Genomes Genotypes.
A subset of 1000 Genomes Project samples' single nucleotide polymorphism(s), or, SNP(s) have been parsed from the publicly available .bcf files.
The subset of SNPs were chosen from two publications which identified AISNPs:
- Set of 55 AISNPs. Progress toward an efficient panel of SNPs for ancestry inference. Kidd et al. 2014
- Set of 128 AISNPs. Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America.. Kosoy et al. 2009 (Seldin Lab)
Kidd 55 AISNPs: Subset the 1kG data to the 55 SNPs listed in the manuscript.Seldin 128 AISNPs: Subset the 1kG data to the 128 SNPs listed in the manuscript.
Super Population: One of {AFR, AMR, EAS, EUR, SAS}.Population: One of the 26 populations listed here.
The code used to process this data is available on GitHub.