Update docs

docs/pages/api.rst

@@ -1,13 +1,6 @@
 API documentation
 =================
 
-Noise
--------
-
-.. automodule:: scope.noise
-    :members:
-    :undoc-members:
-    :show-inheritance:
 
 Broadening
 -----------
@@ -24,8 +17,8 @@ Fitting
     :undoc-members:
     :show-inheritance:
 
-Obs simulator
-------------------
+Utility functions
+-------------------
 
 .. automodule:: scope.utils
     :members:
@@ -46,10 +39,62 @@ Tellurics
     :undoc-members:
     :show-inheritance:
 
+Noise
+------------------
+
+.. automodule:: scope.noise
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+R-M effect
+------------------
+
+.. automodule:: scope.rm_effect
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
 Cross-correlation
 ------------------
 
 .. automodule:: scope.ccf
     :members:
     :undoc-members:
     :show-inheritance:
+
+
+Running simulation
+--------------------
+
+.. automodule:: scope.run_simulation
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Calculating quantities
+-----------------------
+
+.. automodule:: scope.calc_quantities
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Input / output
+-----------------------
+
+.. automodule:: scope.input_output
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+MCMC fitting
+-----------------------
+
+.. automodule:: scope.emcee_fit_hires
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/pages/installation.rst

@@ -12,10 +12,15 @@ All of the required dependencies will be installed automatically. Our current li
 (which will be pruned by v1.0.0) is:
 
 * https://github.com/numpy/numpy
+* https://github.com/astropy/astropy
 * https://github.com/scipy/scipy
+* https://github.com/pandas-dev/pandas
 * https://github.com/matplotlib/matplotlib
+* https://github.com/adrn/schwimmbad
 * https://github.com/google/jax
-* https://github.com/numpy/numpy
+* https://github.com/numba/numba
+* https://github.com/dfm/emcee
+* https://github.com/pymc-devs/pymc
 * https://github.com/scikit-learn/scikit-learn
 * https://github.com/exoplanet-dev/exoplanet
 * https://github.com/tqdm/tqdm

docs/pages/versioning.rst

@@ -18,11 +18,5 @@ signifying the degree to which developers are confident in production-ready
 In practice
 ------------
 This only applies to developers with write access to the code base. All that
-needs to be done is:
-
-1. Adjust the version specified in :code:`src/scope/__init__.py`. This will
-   automatically update docs and :code:`setup.py` configurations.
-2. Update the GitHub release version to match the version specified in Step 1.
-
-Ideally, we'd have a CI/CD pipeline that automatically makes a new release when the init
-file is incremented.
+needs to be done is make a new release on GitHub---the ``pyproject.toml`` file will automatically
+read this information and update the package accordingly.