diff --git a/backends-clickhouse/src/test/scala/io/glutenproject/execution/GlutenClickHouseTPCHParquetSuite.scala b/backends-clickhouse/src/test/scala/io/glutenproject/execution/GlutenClickHouseTPCHParquetSuite.scala
index 4b041654a394..fe5a03adfe79 100644
--- a/backends-clickhouse/src/test/scala/io/glutenproject/execution/GlutenClickHouseTPCHParquetSuite.scala
+++ b/backends-clickhouse/src/test/scala/io/glutenproject/execution/GlutenClickHouseTPCHParquetSuite.scala
@@ -2070,6 +2070,16 @@ class GlutenClickHouseTPCHParquetSuite extends GlutenClickHouseTPCHAbstractSuite
     compareResultsAgainstVanillaSpark(sql, true, { _ => })
   }
 
+  test("test in-filter contains null value (bigint)") {
+    val sql = "select s_nationkey from supplier where s_nationkey in (null, 1, 2)"
+    compareResultsAgainstVanillaSpark(sql, true, { _ => })
+  }
+
+  test("test in-filter contains null value (string)") {
+    val sql = "select n_name from nation where n_name in ('CANADA', null, 'BRAZIL')"
+    compareResultsAgainstVanillaSpark(sql, true, { _ => })
+  }
+
   test("GLUTEN-3287: diff when divide zero") {
     withSQLConf(
       SQLConf.OPTIMIZER_EXCLUDED_RULES.key -> (ConstantFolding.ruleName + "," + NullPropagation.ruleName)) {
diff --git a/cpp-ch/local-engine/Parser/SerializedPlanParser.cpp b/cpp-ch/local-engine/Parser/SerializedPlanParser.cpp
index 680dcda6c0a9..5e8ebae4804a 100644
--- a/cpp-ch/local-engine/Parser/SerializedPlanParser.cpp
+++ b/cpp-ch/local-engine/Parser/SerializedPlanParser.cpp
@@ -1839,6 +1839,7 @@ const ActionsDAG::Node * SerializedPlanParser::parseExpression(ActionsDAGPtr act
                 DB::ActionsDAG::NodeRawConstPtrs cast_args({function_node, add_column(type, true), add_column(type, Field())});
                 auto cast = FunctionFactory::instance().get("if", context);
                 function_node = toFunctionNode(actions_dag, "if", cast_args);
+                actions_dag->addOrReplaceInOutputs(*function_node);
             }
             return function_node;
         }