diff --git a/run/scenarios/helloworld.sh b/run/scenarios/helloworld.sh index ff76e3b..3fefe8c 100755 --- a/run/scenarios/helloworld.sh +++ b/run/scenarios/helloworld.sh @@ -1,6 +1,5 @@ #!/bin/sh -. ~/set_proxy.sh sifFile=/work/SC/lisa/${USER}/cnes-lisa-globalfit1-idasoft-hpc.sif # select=Number of node diff --git a/run/scenarios/nominal.sh b/run/scenarios/nominal.sh index 47e496a..cdae0c0 100755 --- a/run/scenarios/nominal.sh +++ b/run/scenarios/nominal.sh @@ -1,6 +1,5 @@ #!/bin/sh -. ~/set_proxy.sh sifFile=/work/SC/lisa/${USER}/cnes-lisa-globalfit1-idasoft-hpc.sif # Default is 100000. Estimation time (depends on the ressources): default steps takes around a week. 10000 steps takes around 30min. diff --git a/run/scenarios/profiling.sh b/run/scenarios/profiling.sh index 751ab28..653a2a1 100755 --- a/run/scenarios/profiling.sh +++ b/run/scenarios/profiling.sh @@ -1,6 +1,5 @@ #!/bin/sh -. ~/set_proxy.sh sifFile=/work/SC/lisa/${USER}/cnes-lisa-globalfit1-idasoft-hpc.sif # Default is 100000. Estimation time (depends on the ressources): default steps takes around a week. 10000 steps takes around 30min. diff --git a/run/scenarios/quicktest-trana.sh b/run/scenarios/quicktest-trana.sh new file mode 100755 index 0000000..b9a7ccf --- /dev/null +++ b/run/scenarios/quicktest-trana.sh @@ -0,0 +1,26 @@ +#!/bin/sh + +sifFile=/work/SC/lisa/${USER}/cnes-lisa-globalfit1-idasoft-hpc.sif + +# Default is 100000. Estimation time (depends on the ressources): default steps takes around a week. 10000 steps takes around 30min. +steps=10000 +# select=Number of node +# ncpus=Number of Cpus per node for all processes +# mpiprocs=Number of Cpus per node allocated for MPI. +pbsRss="select=1:ncpus=40:mpiprocs=8:mem=50gb:os=rh7:generation=g2019" +# Number of OpenMP threads. The higher the lesser for walltime (better). +ompNumThreads=5 +# Number of chains for tempering movement. Must be a multiple of OpenMP threads. +chains=15 +walltime=00:30:00 + +globalFitMode=full +globalFitProfile=nominal + +qsubVar=pbsRss="${pbsRss}",runningMode=mpiGlobalFit,singularityFile="${sifFile}",inputFile=/work/SC/lisa/LDC/LDCdata/Challenge2/LDC2_sangria_training_v2.h5\ +,globalFitMode=${globalFitMode},globalFitProfile=${globalFitProfile}\ +,vgbFile=$PWD/run/auxiliaryfiles/${globalFitProfile}/ldc_sangria_vgb_list.dat,mbhDirectory=$PWD/run/auxiliaryfiles/${globalFitProfile}/,ucbDirectory=$PWD/run/auxiliaryfiles/${globalFitProfile}/\ +,steps="${steps}",ompNumThreads="${ompNumThreads}",chains="${chains}" +sudo qsub -u trana -W block=false -l "${pbsRss}" -l walltime="${walltime}" -v "${qsubVar}" ./run/run_pbs.sh + + diff --git a/run/scenarios/quicktest.sh b/run/scenarios/quicktest.sh index 023ea31..f86791d 100755 --- a/run/scenarios/quicktest.sh +++ b/run/scenarios/quicktest.sh @@ -1,6 +1,5 @@ #!/bin/sh -. ~/set_proxy.sh sifFile=/work/SC/lisa/${USER}/cnes-lisa-globalfit1-idasoft-hpc.sif # Default is 100000. Estimation time (depends on the ressources): default steps takes around a week. 10000 steps takes around 30min.