- To use, simply do this in command line:
>>> python main.py --input <filename> --output <filename> --threads <default 1>
- Reference
- Weighted mutual information analysis substantially improves domain-based functional network models https://academic.oup.com/bioinformatics/article/32/18/2824/1744011
- Input file format
- .csv with columns = protein domain, rows = proteins see /test_file/small_test as example
- Output file format
- .csv with columns: gene_one, gene_two, weighted_mutual_info