To use, simply do this in command line: >>> python weighted_mutual/main.py -h
Reference Weighted mutual information analysis substantially improves domain-based functional network models https://academic.oup.com/bioinformatics/article/32/18/2824/1744011
Options: -h, --help show this help message and exit -p POOL, --pool=POOL number of multiprocessing threads -g GOLD_ANNO, --goldanno=GOLD_ANNO path to gold_anno pickle dataframe --global=GLOBAL_GOLD_ANNO gold_anno of the whole pan-genome, or proteome space -o OUTDIR, --outdir=OUTDIR output directory -c N_CHUNK, --chunk=N_CHUNK select chunk size to --use_global generate global pivot table or not