| title | author | date | site | output | github-repo |
|---|---|---|---|---|---|
Image Processing Pipeline |
| Laboratory of Systems Pharmacology
|
Last Updated: `r Sys.Date()` |
bookdown::bookdown_site |
bookdown::gitbook |
labsyspharm/rnmicro |
- Stitch and register your images with ASHLAR
- Segment your images using U-Net
- Quantify segmentation masks using headless HistoCAT
- Assign cell type identities
The instructions are under development as the LSP image processing pipeline matures. If you have a module that you would like to see included, please view the vignette on how to contribute to this guide.