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Multi state #244

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Multi state #244

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@johannespiller
Add additional test for multistate. So far only example
a20b16f
@johannespiller
Add temporary folder to upload debugging files, can be deleted when f…
c05ca98 
…inished
@johannespiller
Added split-data.R functions to debug
2034a1a
@johannespiller
Fix error 'get_cut applied to an object of class list' by specifying …
be55d24 
…get_cut.list
@johannespiller
seperate debugging file in functions and script
d40f11a
@johannespiller
Added dimensionality tests for as_ped_multistate
1d59898
@johannespiller
initial version of add_trans_prob
56e0de4
@johannespiller
pammtools comparison with beyersmann example
f16f5e8
@johannespiller
update add_trans_prob and run scripts so that make_newdata with group…
071b8bb 
…s other than transition works. not final yet. Add abstract example mgus2 run script
@johannespiller
add run script of survival package example. excessive runtime for fit…
e0137de 
…ting gam
@johannespiller
include scam class in warn_about_time_points to accept scam splines
dc0fd87
@johannespiller
fix type in warning
ce32ca4
@johannespiller
add x-make.scam for scam objects2
781bac2
@johannespiller
add object class scam
2ba2adc
@johannespiller
Bugfix of hard coded dimensions
baec409
@johannespiller
add all calculated examples
f603a5a
@johannespiller
add some comments
8b4fc0e
@johannespiller
update picture of hgb spline for iwsm abstract
0124a88
@johannespiller
update transition probability picture
8b7bef3
@johannespiller
rename plots with different effects: contour, groups
370402a
@johannespiller
push up-to-date code for sample calculation
561d389
@johannespiller
add comment
88e91bf
@johannespiller
add new figure for iwsm abstract with contour lines
aef4a84
@johannespiller
update code to calculate example
b8ee5f8
@johannespiller
add iwsm files
cbc6946
@johannespiller
add debugging file of fct trans_prob: improve performance, debugging,…
3eff881 
… and commenting
@johannespiller
Performance update transition matrices, testing on large dataset ndata
c05d8fa
@johannespiller
initial simulation file for debugging transition probability code
7fdcd69
@johannespiller
initial simulation codes for msm
0d91e77
@johannespiller
added new simulations and extended beyersmann example calculations fo…
80dce34 
…r sanity checks of add_transition_probabilities
adibender and others added 30 commits August 1, 2024 21:41
@adibender
Merge remote-tracking branch 'origin/master' into multi-state
53ccd8f 
# Conflicts:
#	DESCRIPTION
#	man/dplyr_verbs.Rd
#	man/geom_hazard.Rd
#	man/geom_stepribbon.Rd
#	tests/testthat/test-as-ped.R
@johannespiller
push tmp folder
d22858c
@johannespiller
merge conflict man
cd32792
@johannespiller
merge conflict
047353a
@johannespiller
resolve descr and namespace
43e7340
@johannespiller
multi state helpers
b9683ec
@johannespiller
include add_trans_ci in add_trans_prob
c4ea59e
@johannespiller
resolve error
ddc8184
@johannespiller
commit all changes due to errors loading the package
5323cf6
@johannespiller
remove .Rdata
30099bd
@johannespiller
push most current multi state version
d01c17c
@johannespiller
comparision of transition probabilities are added
27a3584
@johannespiller
change colors of plots
dd2dd6e
@johannespiller
correct wrong data table test
dcb7495
@johannespiller
delete print statements
5ddb571
@johannespiller
most current version
e059733
@johannespiller
include minimax fct to overcome well-definedness issues as a quick fix
c1cd017
@johannespiller
include test for add_trans_prob fct
7f42eef
@johannespiller
adapt split-data.R to work with variable cut. Include event time poin…
05391f5 
…ts when needed
@johannespiller
save debugging file for next weekly
579ec35
@johannespiller
debug split-data max_time. now working for multi state data as well
de74e6b
@johannespiller
fix error message of tests: outcome var was not defined in cut-points.R
8df3096
@johannespiller
fix error message: include mstate package to load prothr data for tes…
b2e9109 
…tthat
@johannespiller
fix error message: include multi-state vignette in pkgdown
3758ae2
@johannespiller
fix error with geom_stepribbon: no manual found, copied code from master
dcaef08
@johannespiller
add manuals which have been missing, created using devtools::document()
2735212
@johannespiller
update namespace and documentation with missing fcts
e5afe01
@johannespiller
debugging error messages in from package
463ef44
@johannespiller
Fix headline and exclude tidyverse lib
08ca968
@johannespiller
add msm and mvna library to website
ffb5cb4
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2 participants
@adibender @johannespiller