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CHANGELOG.md

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pycoMeth Changelog

09/10/2019 v-0.1.0

  • Deep refactoring of Freq_meth_calculate to Aggregate
  • Major doc update including doc folders reorganisation
  • Implement autodoc from docstring
  • Fix and test CLI

01/04/2020 v-0.4.0

  • General improvement of logging message output
  • Implement fancy color logger
  • Add position tracking within intervals
  • Add Comp_Report module to generate HTML reports of significant candidates

15/01/2020 v-0.4.5

  • Add tabular text reports to Comp_report
  • Add (default) option to write out all the intervals in Meth_Comp with reasons why excluded or included in DM analysis
  • Improve Comp_report summary table and include new fields from Meth_Comp
  • Tidy output folder structure for reports generated by meth_report
  • Add Chromosome ideogram plot to summary report
  • A fasta reference is now required to run Comp_Report

09/07/2020 v-0.4.8

  • Speed improvement to Comp_report
  • Add interactive API to Comp_report
  • Add ability to export static plots using orca

16/07/2020 v-0.4.14

  • Switch from orca to kaleido for static export
  • Export summary of intervals in table file for all intervals and not just for top hits
  • Add new plot for distance between CpG islands and closest tss