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cnetplot show GO terms and I would like to use description #289
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Since apparently there is no You likely used the generic function |
Mylist.annot is a list of DE genes for a specific time. EnrichR.KO <- lapply(mylist.annot, function(i) { #Enrichment analysis |
... and of and Please format your code! |
BTW, it works in my hands... See below for some reproducible code mimicking what you try to achieve, and I would suggest you compare it with what you use as inputs.
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So it seems your problem is not directly related to Yet, it is not clear to me what exactly you try to achieve. To increase your chance of getting more feedback I suggest your provide some reproducible code that illustrates your goal (and problem!). To do so you maybe could use my example code as starting point? |
Thank you for the idea, I will use your code and I will back (after holidays :) ) |
Hello ! using the example dataset.data(geneList, package="DOSE") genes2 <- names(geneList)[abs(geneList) > 3] run enricherres <- enricher(gene = genes, res2 <- enricher(gene = genes2, both <- list(res, res2) cnetplot(both, showCategory = 9) |
I realize that you updated this thread few weeks ago, but I hope my reply is still useful. It looks to me that you forgot to include the Using the code from your previous post, until the generation of
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It's always useful, thank you very much. Indeed, using merge_result it works ! |
Hello,
I'm trying to plot a list of my results of enrichment analysis but my plot show GO terms and I would like to show description.
If I plot just one element of my list there is no problem to show the description
EnrichR.KO # the list with all enrichment results
cnetplot(EnrichR.KO, circular = T, showCategory = 9)
Testing with the first element of the list
cnetplot(EnrichR.KO[[1]], node_label = "category")
Note: I didn't use setReadable() because there is no db for my organism (Phaeodactylum tricornutum).
Could you help me please ?
Thank you.
Irelka
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