Unable to install r package for clusterProfiler

[shaliniC23]

writen code:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")

BiocManager::install("clusterProfiler")

console output:

if (!require("BiocManager", quietly = TRUE))

• install.packages("BiocManager")

BiocManager::install("clusterProfiler")
'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package =
"BiocManager")' for details.
Replacement repositories:
CRAN: https://cran.rstudio.com/
Bioconductor version 3.19 (BiocManager 1.30.23), R 4.4.1 (2024-06-14)
Installation paths not writeable, unable to update packages
path: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library
packages:
foreign, MASS, nlme, survival
Warning message:
package(s) not installed when version(s) same as or greater than current; use force = TRUE to
re-install: 'clusterProfiler'

[guidohooiveld]

Because of this warning message:

package(s) not installed when version(s) same as or greater than current; use force = TRUE to
re-install: 'clusterProfiler'

It seems to me that clusterProfiler was already installed!

What happens if you load clusterProfiler by typing library(clusterProfiler)?

Also, yet not related to you question, but still relevant is this message:

Installation paths not writeable, unable to update packages

This means that you will need to start R as administrator in order to update the R core packages foreign, MASS, nlme, and survival.