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Hi, thanks for your tools.
When I try to give annotion to my bed file of ATAC-Seq data, I used code of following. peakAnno <- annotatePeak(Ascl1_1_peaks,TxDb=txdb,tssRegion=c(-3000, 3000), verbose=FALSE,addFlankGeneInfo=TRUE, flankDistance=5000,annoDb="org.Mm.eg.db")
But it always prompts the error like 'Error: invalid subscript'.
So I try to check my input file with head(peaks).
Hi, thanks for your tools.
When I try to give annotion to my bed file of ATAC-Seq data, I used code of following.
peakAnno <- annotatePeak(Ascl1_1_peaks,TxDb=txdb,tssRegion=c(-3000, 3000), verbose=FALSE,addFlankGeneInfo=TRUE, flankDistance=5000,annoDb="org.Mm.eg.db")
But it always prompts the error like 'Error: invalid subscript'.
So I try to check my input file with
head(peaks)
.Is there any mistakes in my file, or how can I solve this problem?
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