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@XieResearchGroup

Hunter College, The City University of New York

Educational Institute

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  1. Physics-aware-Multiplex-GNN Physics-aware-Multiplex-GNN Public

    Code for our Nature Scientific Reports paper "A universal framework for accurate and efficient geometric deep learning of molecular systems"

    Python 53 11

  2. CODE-AE CODE-AE Public

    Coherent Deconfounding Autoencoder (CODE-AE) can extract both common biological signals shared by incoherent samples and private representations unique to each data set, transfer knowledge learned …

    Jupyter Notebook 16 8

  3. DISAE DISAE Public

    MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphanization

    Python 11 4

  4. DeepREAL DeepREAL Public

    DeepREAL: A Deep Learning Powered Multi-scale Modeling Framework Towards Predicting Out-of-distribution Receptor Activity of Ligand Binding

    Python 10 1

  5. MolGNN_fewshot MolGNN_fewshot Public

    Python 5 3

  6. PortalLearning PortalLearning Public

    Python 3

Repositories

Showing 10 of 26 repositories
  • Physics-aware-Multiplex-GNN Public

    Code for our Nature Scientific Reports paper "A universal framework for accurate and efficient geometric deep learning of molecular systems"

    XieResearchGroup/Physics-aware-Multiplex-GNN’s past year of commit activity
    Python 53 11 0 0 Updated Oct 31, 2024
  • MMAPLE Public
    XieResearchGroup/MMAPLE’s past year of commit activity
    Python 0 0 0 0 Updated Oct 1, 2024
  • CODE-AE Public

    Coherent Deconfounding Autoencoder (CODE-AE) can extract both common biological signals shared by incoherent samples and private representations unique to each data set, transfer knowledge learned from cell line data to tissue data, and separate confounding factors from them

    XieResearchGroup/CODE-AE’s past year of commit activity
    Jupyter Notebook 16 8 0 0 Updated Oct 1, 2024
  • eMOSAIC Public
    XieResearchGroup/eMOSAIC’s past year of commit activity
    Python 0 0 0 0 Updated Oct 1, 2024
  • PrePROTAC Public

    PrePROTAC project

    XieResearchGroup/PrePROTAC’s past year of commit activity
    Python 2 0 0 0 Updated Jul 24, 2023
  • MultiDCP Public
    XieResearchGroup/MultiDCP’s past year of commit activity
    Python 2 2 1 0 Updated Apr 24, 2023
  • TransPro Public
    XieResearchGroup/TransPro’s past year of commit activity
    Python 1 1 0 0 Updated Mar 13, 2023
  • XieResearchGroup/PortalLearning’s past year of commit activity
    Python 3 0 0 0 Updated Feb 20, 2023
  • DISAE Public

    MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphanization

    XieResearchGroup/DISAE’s past year of commit activity
    Python 11 4 10 0 Updated Oct 16, 2022
  • PLANS Public

    Self Training Drug Side Effects Detector

    XieResearchGroup/PLANS’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 25, 2022

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