From 73501ab11d63578b6d06241dd5a4fecc3302573d Mon Sep 17 00:00:00 2001 From: Clare72 Date: Thu, 19 Sep 2024 10:46:34 +0100 Subject: [PATCH 1/2] update_repo --- .github/workflows/qc.yml | 2 +- src/ontology/Makefile | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/qc.yml b/.github/workflows/qc.yml index 6ec8e92..ec0efec 100644 --- a/.github/workflows/qc.yml +++ b/.github/workflows/qc.yml @@ -19,7 +19,7 @@ jobs: ontology_qc: # The type of runner that the job will run on runs-on: ubuntu-latest - container: obolibrary/odkfull:v1.5.1 + container: obolibrary/odkfull:v1.5.2 # Steps represent a sequence of tasks that will be executed as part of the job steps: diff --git a/src/ontology/Makefile b/src/ontology/Makefile index fea7ae0..78f77fb 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -1,7 +1,7 @@ # ---------------------------------------- # Makefile for VFB_drivers # Generated using ontology-development-kit -# ODK Version: v1.5.1 +# ODK Version: v1.5.2 # ---------------------------------------- # IMPORTANT: DO NOT EDIT THIS FILE. To override default make goals, use VFB_drivers.Makefile instead @@ -47,7 +47,7 @@ REPORT_PROFILE_OPTS = --profile $(ROBOT_PROFILE) OBO_FORMAT_OPTIONS = SPARQL_VALIDATION_CHECKS = owldef-self-reference iri-range label-with-iri multiple-replaced_by SPARQL_EXPORTS = basic-report class-count-by-prefix edges xrefs obsoletes synonyms -ODK_VERSION_MAKEFILE = v1.5.1 +ODK_VERSION_MAKEFILE = v1.5.2 TODAY ?= $(shell date +%Y-%m-%d) OBODATE ?= $(shell date +'%d:%m:%Y %H:%M') From 5dd0fb0cc6c10ea051b2c65cd6badefb1e69f421 Mon Sep 17 00:00:00 2001 From: Clare72 Date: Thu, 19 Sep 2024 10:49:13 +0100 Subject: [PATCH 2/2] release files 2024-09-19 --- VFB_drivers-base.owl | 6 +++--- VFB_drivers-cedar.owl | 7 ++++--- VFB_drivers-full.owl | 7 ++++--- VFB_drivers.owl | 5 +++-- src/ontology/imports/merged_import.owl | 5 +++-- 5 files changed, 17 insertions(+), 13 deletions(-) diff --git a/VFB_drivers-base.owl b/VFB_drivers-base.owl index 507ed1d..11e7e7d 100644 --- a/VFB_drivers-base.owl +++ b/VFB_drivers-base.owl @@ -11,14 +11,14 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + An ontology of Drosophila melanogaster drivers and expression patterns. All genetic objects are created using data taken directly from FlyBase. VFB Driver Ontology http://orcid.org/0000-0002-1373-1705 https://creativecommons.org/licenses/by/4.0/ - 16:09:2024 01:38 - 2024-09-16 + 19:09:2024 09:47 + 2024-09-19 diff --git a/VFB_drivers-cedar.owl b/VFB_drivers-cedar.owl index 4b9c8d0..3219a15 100644 --- a/VFB_drivers-cedar.owl +++ b/VFB_drivers-cedar.owl @@ -11,14 +11,14 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + An ontology of Drosophila melanogaster drivers and expression patterns. All genetic objects are created using data taken directly from FlyBase. VFB Driver Ontology http://orcid.org/0000-0002-1373-1705 https://creativecommons.org/licenses/by/4.0/ - 16:09:2024 01:37 + 19:09:2024 09:47 This release artefact does not contain the 'has hemidriver' relationships and may not be suitable for most users. - 2024-09-16 + 2024-09-19 @@ -126,6 +126,7 @@ + A relationship between an interesctional expression pattern and one of the hemidrivers that contributes to driving its expression. For example, the split-GAL4 system drives expression using transgenes encoding a pair of interacting proteins, one with a GAL4 DNA binding domain and one with an transcription activation domain. In cells that co-express these two transgenes, interaction between the two proteins reconsitutes a transcription factor, driving expression from transgenes under the control o f UAS enhancer/promoter elements. has hemidriver diff --git a/VFB_drivers-full.owl b/VFB_drivers-full.owl index ae61f34..0a95316 100644 --- a/VFB_drivers-full.owl +++ b/VFB_drivers-full.owl @@ -11,13 +11,13 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + An ontology of Drosophila melanogaster drivers and expression patterns. All genetic objects are created using data taken directly from FlyBase. VFB Driver Ontology http://orcid.org/0000-0002-1373-1705 https://creativecommons.org/licenses/by/4.0/ - 16:09:2024 01:37 - 2024-09-16 + 19:09:2024 09:47 + 2024-09-19 @@ -125,6 +125,7 @@ + A relationship between an interesctional expression pattern and one of the hemidrivers that contributes to driving its expression. For example, the split-GAL4 system drives expression using transgenes encoding a pair of interacting proteins, one with a GAL4 DNA binding domain and one with an transcription activation domain. In cells that co-express these two transgenes, interaction between the two proteins reconsitutes a transcription factor, driving expression from transgenes under the control o f UAS enhancer/promoter elements. has hemidriver diff --git a/VFB_drivers.owl b/VFB_drivers.owl index ca4b49c..54b4ff2 100644 --- a/VFB_drivers.owl +++ b/VFB_drivers.owl @@ -15,8 +15,8 @@ VFB Driver Ontology http://orcid.org/0000-0002-1373-1705 https://creativecommons.org/licenses/by/4.0/ - 16:09:2024 01:37 - 2024-09-16 + 19:09:2024 09:47 + 2024-09-19 @@ -124,6 +124,7 @@ + A relationship between an interesctional expression pattern and one of the hemidrivers that contributes to driving its expression. For example, the split-GAL4 system drives expression using transgenes encoding a pair of interacting proteins, one with a GAL4 DNA binding domain and one with an transcription activation domain. In cells that co-express these two transgenes, interaction between the two proteins reconsitutes a transcription factor, driving expression from transgenes under the control o f UAS enhancer/promoter elements. has hemidriver diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 52aef34..6624267 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-09-16") + +Annotation(owl:versionInfo "2024-09-19") Declaration(Class()) Declaration(Class()) @@ -42,6 +42,7 @@ Declaration(AnnotationProperty( "PMID:17088209") "A relationship between an interesctional expression pattern and one of the hemidrivers that contributes to driving its expression. For example, the split-GAL4 system drives expression using transgenes encoding a pair of interacting proteins, one with a GAL4 DNA binding domain and one with an transcription activation domain. In cells that co-express these two transgenes, interaction between the two proteins reconsitutes a transcription factor, driving expression from transgenes under the control o f UAS enhancer/promoter elements.") AnnotationAssertion(rdfs:label "has hemidriver"@en) +ObjectPropertyDomain( )