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anat_Xu2020roi_201008 test is failing #84

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Robbie1977 opened this issue May 13, 2021 · 1 comment
Open

anat_Xu2020roi_201008 test is failing #84

Robbie1977 opened this issue May 13, 2021 · 1 comment
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@Robbie1977
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Been deleted in @dosumis and @admclachlan's repo so cleared from @Clare72s but should either be fixed or removed from master?

https://github.com/VirtualFlyBrain/curation/blob/master/src/vfb/curation/test/resources/records/new_images/to_submit/anat_Xu2020roi_201008.tsv

  warnings.warn("No properties to check.")
WARNING:root:Error in record anat_Xu2020roi_201008, row
 {'filename': "a'1(R)", 'synonyms': "a'1(R)", 'is_a': "mushroom body alpha' lobe slice 1", 'part_of': 'adult brain', 'label': "a'1(R) on JRC_FlyEM_Hemibrain", 'Template': 'JRC_FlyEM_Hemibrain_c', 'Imaging_type': 'computer graphic', 'Curator': 'adm71', 'DataSet': 'Xu2020roi'}
:Not attempting to write row due to invalid object 'mushroom body alpha' lobe slice 1'.
Traceback (most recent call last):
  File "run_peevish.py", line 68, in <module>
    raise Exception("Failing records. See preceding warnings for details.")
Exception: Failing records. See preceding warnings for details.```
@dosumis
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dosumis commented May 13, 2021

This is a code test. We just need to change or delete this example. Should be done in master and merged out to branches, like any other code change. I'm wondering why it has started failing. I may have added this example to test handling of single quotes in names.

Robbie1977 added a commit that referenced this issue Sep 1, 2021
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