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globalnamesresolver.json
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globalnamesresolver.json
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# The following script can be used in OpenRefine after creating a project with one
# column of genus names. The script uses the Global Names API to resolve the genera
# based on the source_ids selected. 1=Catalogue of Life, 172=Paleobiology Database,
# 8=Interim Register of Marine and Nonmarine Genera, etc. as found at
# http://resolver.globalnames.org/data_sources.
[
{
"op": "core/column-rename",
"description": "Rename column Column 1 to verbatimGenus",
"oldColumnName": "Column 1",
"newColumnName": "verbatimGenus"
},
{
"op": "core/column-addition-by-fetching-urls",
"description": "Create column resolverResults at index 1 by fetching URLs based on column verbatimGenus using expression grel:\"http://resolver.globalnames.org/name_resolvers.json?names=\"+escape(cells[\"verbatimGenus\"].value,\"url\")+\"&data_source_ids=8&with_context=false&best_match_only=false&resolve_once=true\"",
"engineConfig": {
"facets": [],
"mode": "row-based"
},
"newColumnName": "resolverResults",
"columnInsertIndex": 1,
"baseColumnName": "verbatimGenus",
"urlExpression": "grel:\"http://resolver.globalnames.org/name_resolvers.json?names=\"+escape(cells[\"verbatimGenus\"].value,\"url\")+\"&data_source_ids=8&with_context=false&best_match_only=false&resolve_once=true\"",
"onError": "set-to-blank",
"delay": 100
},
{
"op": "core/column-addition",
"description": "Create column classification at index 2 based on column resolverResults using expression grel:value.parseJson(\" { 'a' : 1 } \").get(\"data\")[0].get(\"results\")[0].get(\"classification_path\")",
"engineConfig": {
"facets": [],
"mode": "row-based"
},
"newColumnName": "classification",
"columnInsertIndex": 2,
"baseColumnName": "resolverResults",
"expression": "grel:value.parseJson(\" { 'a' : 1 } \").get(\"data\")[0].get(\"results\")[0].get(\"classification_path\")",
"onError": "set-to-blank"
},
{
"op": "core/column-move",
"description": "Move column classification to position 0",
"columnName": "classification",
"index": 0
},
{
"op": "core/column-split",
"description": "Split column classification by separator",
"engineConfig": {
"facets": [],
"mode": "row-based"
},
"columnName": "classification",
"guessCellType": true,
"removeOriginalColumn": true,
"mode": "separator",
"separator": "|",
"regex": false,
"maxColumns": 0
}
]