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prepINITModel not ignoring custom reactions in model pruning #507

Answered by johan-gson
wshao1 asked this question in Help me!
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Hi @wshao1 , customRxnsToIgnore does not do this, these are the reactions that are not included in the first step in the algorithm, so something different. I have not thought of this case, there is no direct support for it, it would eventually be a good thing to add as it would be a very simple fix. I'm very short on time right now, so I cannot engage in any development right now. If you want, you could modify the code to take care of this. A suggestion is to test the following: In prepINITModel, add two parameters:
function prepData = prepINITModel(origRefModel, taskStruct, spontRxnNames, convertGenes, customRxnsToIgnore, extComp, skipScaling, extraEssentialRxns, extraEssentialDirs)

you …

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@wshao1
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