diff --git a/seqfu/1.20.3/Dockerfile b/seqfu/1.20.3/Dockerfile index 8fcf217c0..64338ca30 100644 --- a/seqfu/1.20.3/Dockerfile +++ b/seqfu/1.20.3/Dockerfile @@ -71,8 +71,12 @@ WORKDIR /data RUN ls -l /usr/local/bin && \ seqfu --version && seqfu --help +# Running seqfu on test staph-b test dataset +FROM app AS test + RUN mkdir tests && cd tests && \ wget -q https://github.com/StaPH-B/docker-builds/raw/master/tests/SARS-CoV-2/SRR13957123_1.fastq.gz && \ wget -q https://github.com/StaPH-B/docker-builds/raw/master/tests/SARS-CoV-2/SRR13957123_2.fastq.gz && \ - seqfu check SRR13957123_1.fastq.gz SRR13957123_2.fastq.gz && \ - seqfu count -f SRR13957123_1.fastq.gz -r SRR13957123_2.fastq.gz + seqfu check SRR13957123_1.fastq.gz SRR13957123_2.fastq.gz > seqfu_check_test.txt && \ + seqfu count -f SRR13957123_1.fastq.gz -r SRR13957123_2.fastq.gz > seqfu_count_test.txt +