From 183227580de4f4bb2bc3898cddfa2d29a3b6fa2a Mon Sep 17 00:00:00 2001 From: taylorpaisie Date: Wed, 2 Oct 2024 13:15:43 -0400 Subject: [PATCH] updating test data in seqfu dockerfile --- seqfu/1.20.3/Dockerfile | 18 ------------------ 1 file changed, 18 deletions(-) diff --git a/seqfu/1.20.3/Dockerfile b/seqfu/1.20.3/Dockerfile index 68f2b92ec..8fcf217c0 100644 --- a/seqfu/1.20.3/Dockerfile +++ b/seqfu/1.20.3/Dockerfile @@ -71,26 +71,8 @@ WORKDIR /data RUN ls -l /usr/local/bin && \ seqfu --version && seqfu --help -# Running RDP on test controls -FROM app AS test - RUN mkdir tests && cd tests && \ wget -q https://github.com/StaPH-B/docker-builds/raw/master/tests/SARS-CoV-2/SRR13957123_1.fastq.gz && \ wget -q https://github.com/StaPH-B/docker-builds/raw/master/tests/SARS-CoV-2/SRR13957123_2.fastq.gz && \ seqfu check SRR13957123_1.fastq.gz SRR13957123_2.fastq.gz && \ seqfu count -f SRR13957123_1.fastq.gz -r SRR13957123_2.fastq.gz - - -# RUN wget -q https://github.com/telatin/seqfu2/blob/main/data/tests/sample1_1.fq && \ -# wget -q https://github.com/telatin/seqfu2/blob/main/data/tests/sample1_2.fq && \ -# seqfu count -f sample1_1.fq -r sample1_2.fq - -# RUN wget -q https://github.com/telatin/seqfu2/blob/main/data/tests/sample1_R1.fq && \ -# wget -q https://github.com/telatin/seqfu2/blob/main/data/tests/sample1_R2.fq && \ -# seqfu count -f sample1_R1.fq -r sample1_R2.fq - - - - - -