From 514308a257e38f9b4363dc5f03a9a7a0ec1875b2 Mon Sep 17 00:00:00 2001
From: Alessio Buccino <alejoe9187@gmail.com>
Date: Mon, 4 Mar 2024 18:17:19 +0000
Subject: [PATCH] Remove README and add cuda version to tag

---
 kilosort4/README.md | 39 ---------------------------------------
 kilosort4/build.sh  |  2 +-
 2 files changed, 1 insertion(+), 40 deletions(-)
 delete mode 100644 kilosort4/README.md

diff --git a/kilosort4/README.md b/kilosort4/README.md
deleted file mode 100644
index 83d3405..0000000
--- a/kilosort4/README.md
+++ /dev/null
@@ -1,39 +0,0 @@
-### Build this image
-Build default image: 
-docker build -t pykilosort:latest -f dockerfiles/Dockerfile .
-
-Build image with additional testing components: 
-docker build -t pykilosort:test -f dockerfiles/Dockerfile.testing context
-
-### Run container
-docker run --rm -it -v <host-data-folder>:<docker-data-folder> --gpus all pykilosort:latest
-flags:
---rm: removes container once it's stopped
--it: for interactive session
--v: mounted volumes (directories)
---gpus: enables GPU use within container 
-
-### Test
-Download Neuropixel 1.0 data to your data directory: https://catalystneuro.github.io/spike-sorting-hackathon/datasets/datasets.html#allen-institute-example
-(see also https://github.com/int-brain-lab/pykilosort/tree/ibl_prod/examples, although apparently not up to date)
-
-$docker run --rm -it -v /my/dir/to/data:/data --gpus all pykilosort
-#conda activate pyks2
-#cd /data
-    --- alternatively, get data from kachery (if installed and configured) ---
-    ```
-    wget https://catalystneuro.github.io/spike-sorting-hackathon/datasets/examples/example_allen_NP1.py
-    python example_allen_NP1.py
-    ```
-
-The either run tests in ipython console, or run example from /home/test_file directory (if using `.testing` image), after editing directory paths
-#ipython
-```
-from pathlib import Path
-from pykilosort import run, add_default_handler, np1_probe, np2_probe
-
-data_path = Path('/data/Allen_Institute_NP1/continuous_1min.bin')
-dir_path = Path('/data/Allen_Institute_NP1/output')
-add_default_handler(level='INFO') # print output as the algorithm runs
-run(data_path, dir_path=dir_path, probe=np1_probe(sync_channel=False))
-```
diff --git a/kilosort4/build.sh b/kilosort4/build.sh
index dfda5b6..1c735c3 100755
--- a/kilosort4/build.sh
+++ b/kilosort4/build.sh
@@ -1,3 +1,3 @@
 #!/bin/bash
 
-docker build -t spikeinterface/kilosort4-base:latest -t spikeinterface/kilosort4-base:0.1.0 .
+docker build -t spikeinterface/kilosort4-base:latest -t spikeinterface/kilosort4-base:4.0_cuda-12.0.0 .