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CHANGELOG.md

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Changelog

0.0.10 - 2022-10-11

Added

  • FASTQ support (#37)

Changed

Fixed

  • Usage example now matches packaged structure (#36)
  • Requests to the IMGT server now use HTTPS (#34)

0.0.9 - 2021-07-20

Added

  • --outdir argument to set output directory other than current working directory (#24)
  • --no-collapse argument (and updates to request function) to disable automatic combining of results across batched submissions (#25)

Fixed

  • Empty config files now result in the usual error message about required options (#30)
  • All command-line options now match V-QUEST option names (#28)

0.0.8 - 2021-07-13

Fixed

  • Don't include a trailing empty submission when submitting perfect multiples of 50 sequences (#19)

0.0.7 - 2021-03-17

Fixed

  • Removed a duplicate data directory from build/install process (#16)

0.0.6 - 2021-03-12

Changed

  • Refactored top-level code into separate modules (#13)

Fixed

  • Avoid trying to import dependencies at install time (#13)

0.0.5 - 2021-03-10

Added

  • --align argument (via airr_to_fasta function) for extraction of sequence alignment FASTA from AIRR results (#1)
  • Error messages sent by the server are now raised as an exception containing the server-provided message(s) (#7)

Changed

  • Reorganized and expanded test code as its own package (#6)
  • Added basic test of command-line usage (#10)
  • Clarified wording on required options (#8)

Fixed

  • Parse command-line options that should be integers from a finite list of options as integers instead of strings (#5)