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cml-report.yml
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name: Generate CML Report
on:
pull_request:
types: [ labeled ]
branches:
- master
jobs:
generate_cml_report:
if: github.event.label.name == 'simulation'
runs-on: ubuntu-latest
defaults:
run:
shell: bash
container:
image: ghcr.io/moja-global/rest_api_gcbm:master
ports:
- "8080:8080"
steps:
- name: Checkout repository
uses: actions/checkout@v3
with:
ref: ${{ github.event.pull_request.head.sha }}
- uses: actions/setup-node@v3
with:
node-version: 16
- name: Run the Simulation
run: |
apt-get update && apt-get install unzip -y
pushd local/rest_api_gcbm/tests/
unzip linux-demo.zip
cd config/
/opt/gcbm/moja.cli --config_file gcbm_config.cfg --config_provider provider_config.json
popd
cd local/rest_api_gcbm && mkdir GCBM.CompileResults
- name: Checkout the Repository
uses: actions/checkout@v3
with:
repository: moja-global/GCBM.CompileResults
path: local/rest_api_gcbm/GCBM.CompileResults
- name: Compile the Results
run: |
cd local/rest_api_gcbm
python3 GCBM.CompileResults/compileresults.py sqlite:///tests/output/gcbm_output.db --output_db sqlite:///tests/output/compiled_simulation_output.db
- name: Install dependencies
run: pip3 install pandas matplotlib jupytext
- name: Setup CML
uses: iterative/setup-cml@v1
- name: Send the report
env:
repo_token: ${{ secrets.GITHUB_TOKEN }}
run: |
cd local/rest_api_gcbm
python3 annual_summaries.py
echo "# GCBM Model" > report.md
echo "## Code" >> report.md
jupytext --to md --output - annual_summaries.py >> report.md
# this command takes each cell of the notebook and adds it to report.md as markdown
echo "## Total Biomass Curve" >> report.md
cml publish tests/output/total_biomass_mt.png --md >> report.md
cml send-comment --update report.md