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NEWS.md

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dccvalidator v0.4.0

  • Add check_complete_ids() and samples_table configuration option
  • Fix bug in Data Summary information boxes to not count NA
  • check_all() now checks the biospecimen metadata for ages over 90 in the samplingAge column
  • Results boxes now contain explanations of their contents
  • The wording of some check results has been updated and, hopefully, clarified
  • Add next step message if all validated files have no failures
  • Add reset buttons to documentation and validation sections
  • All tooltips now pop-up with hover instead of clicking
  • Add hover tooltips to all fileInputs
  • Fix bug in behavior for check_ages_over_90() and check_parent_syn()
  • Remove progress bars for file input boxes
  • Add script and functions for updating metadata template dictionary sheets.
  • Update to check_value(): For keys with enumerated values, parse comma-separated and json-style strings and check all values within against allowed values
  • Add customization options for app's study documentation tab, including necessary updates to config.yml
  • Minor fixes to update-metadata-template-dictionaries.R script
  • Update to allow for logging in with authToken
  • Add ability to change to staging endpoints based on config.yml production setting
  • check_annotation_keys() and check_annotation_values() have renamed arguments from whitelist_keys/whitelist_values to allowlist_keys/allowlist_values
  • Add ability to log in with Synapse OAuth client
  • Add ability for check_col_names() (via get_template()) to pull full set of metadata keys from a simple (i.e. has "properties") registered Synapse JSON schema; includes update to get_template() parameters, allowing for backwards compatibility with synID and additional functionality with id.
  • check_all() now expects the template ids to be included in data; if not included, will skip the check for missing column names
  • Added get_metadataType_indices() and gather_template_ids()
  • Add ability to specify biospecimen templates based on type
  • Fixed logic for resetting biospecimen type UI
  • Fixed typo in check_all() that led to manifests being checked against assay templates
  • Add check_invalid_characters() and include in validator_server() to block upload and validation
  • Can now read schemas from files and URLs in addition to registered synapse schemas.

dccvalidator v0.3.0

  • Add check_parent_syn()
  • Add modal message if sessionToken is invalid
  • Add check_ages_over_90()
  • Add check_duplicate_paths()
  • Update can_coerce() to be TRUE for any data type needing to be coerced to character

dccvalidator v0.2.0

  • Move all validation checks to check_all()
  • Move data file summary to module
  • Update can_coerce() to include numeric to integer and character to logical

dccvalidator v0.1.0

Initial release of dccvalidator package.