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environment.yml
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environment.yml
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name: raims
channels:
- nlesc
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_llvm
- absl-py=1.0.0=pyhd8ed1ab_0
- aiohttp=3.8.1=py38h497a2fe_0
- aiosignal=1.2.0=pyhd8ed1ab_0
- anyio=3.5.0=py38h578d9bd_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py38h497a2fe_1
- asttokens=2.0.5=pyhd8ed1ab_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- attrs=21.4.0=pyhd8ed1ab_0
- babel=2.9.1=pyh44b312d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- beautifulsoup4=4.10.0=pyha770c72_0
- bleach=4.1.0=pyhd8ed1ab_0
- blinker=1.4=py_1
- boost=1.74.0=py38h2b96118_5
- boost-cpp=1.74.0=h9359b55_0
- brotli=1.0.9=h7f98852_6
- brotli-bin=1.0.9=h7f98852_6
- brotlipy=0.7.0=py38h497a2fe_1003
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2021.10.8=ha878542_0
- cachetools=5.0.0=pyhd8ed1ab_0
- cairo=1.16.0=h9f066cc_1006
- certifi=2021.10.8=py38h578d9bd_1
- cffi=1.14.4=py38ha312104_0
- charset-normalizer=2.0.12=pyhd8ed1ab_0
- click=7.1.2=pyh9f0ad1d_0
- colorama=0.4.4=pyh9f0ad1d_0
- configparser=5.2.0=pyhd8ed1ab_0
- cryptography=36.0.1=py38h3e25421_0
- cycler=0.11.0=pyhd8ed1ab_0
- dataclasses=0.8=pyhc8e2a94_3
- debugpy=1.5.1=py38h709712a_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- deprecated=1.2.13=pyh6c4a22f_0
- docker-pycreds=0.4.0=py_0
- entrypoints=0.4=pyhd8ed1ab_0
- executing=0.8.3=pyhd8ed1ab_0
- expat=2.4.7=h27087fc_0
- filelock=3.6.0=pyhd8ed1ab_0
- flit-core=3.7.1=pyhd8ed1ab_0
- fontconfig=2.13.96=h8e229c2_2
- fonttools=4.30.0=py38h0a891b7_0
- freetype=2.10.4=h0708190_1
- frozenlist=1.3.0=py38h497a2fe_0
- fsspec=2022.2.0=pyhd8ed1ab_0
- future=0.18.2=py38h578d9bd_4
- gensim=4.1.2=py38h709712a_1
- gettext=0.19.8.1=hf34092f_1004
- gitdb=4.0.9=pyhd8ed1ab_0
- gitpython=3.1.27=pyhd8ed1ab_0
- google-auth=2.6.0=pyh6c4a22f_1
- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
- greenlet=1.1.2=py38h709712a_1
- grpcio=1.44.0=py38hdd6454d_0
- huggingface_hub=0.4.0=pyhd8ed1ab_0
- icu=67.1=he1b5a44_0
- idna=3.3=pyhd8ed1ab_0
- importlib-metadata=4.11.3=py38h578d9bd_0
- importlib_metadata=4.11.3=hd8ed1ab_0
- importlib_resources=5.4.0=pyhd8ed1ab_0
- ipykernel=6.9.2=py38h7f3c49e_0
- ipython=8.1.1=py38h578d9bd_0
- ipython_genutils=0.2.0=py_1
- jedi=0.18.1=py38h578d9bd_0
- jinja2=3.0.3=pyhd8ed1ab_0
- joblib=1.1.0=pyhd8ed1ab_0
- jpeg=9e=h7f98852_0
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=4.4.0=pyhd8ed1ab_0
- jupyter_client=7.1.2=pyhd8ed1ab_0
- jupyter_core=4.9.2=py38h578d9bd_0
- jupyter_server=1.15.3=pyhd8ed1ab_0
- jupyterlab=3.3.2=pyhd8ed1ab_0
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jupyterlab_server=2.10.3=pyhd8ed1ab_0
- kiwisolver=1.4.0=py38h43d8883_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- libblas=3.9.0=13_linux64_mkl
- libbrotlicommon=1.0.9=h7f98852_6
- libbrotlidec=1.0.9=h7f98852_6
- libbrotlienc=1.0.9=h7f98852_6
- libcblas=3.9.0=13_linux64_mkl
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=11.2.0=h1d223b6_14
- libgfortran-ng=11.2.0=h69a702a_14
- libgfortran5=11.2.0=h5c6108e_14
- libglib=2.66.3=hbe7bbb4_0
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=13_linux64_mkl
- libllvm10=10.0.1=he513fc3_3
- libpng=1.6.37=h21135ba_2
- libprotobuf=3.19.4=h780b84a_0
- libsodium=1.0.18=h36c2ea0_1
- libstdcxx-ng=11.2.0=he4da1e4_14
- libtiff=4.2.0=hbd63e13_2
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.2=h7f98852_1
- libxcb=1.13=h7f98852_1004
- libxml2=2.9.10=h68273f3_2
- libxslt=1.1.33=hf705e74_1
- libzlib=1.2.11=h36c2ea0_1013
- llvm-openmp=13.0.1=he0ac6c6_1
- llvmlite=0.34.0=py38h4f45e52_2
- lxml=4.6.3=py38hf1fe3a4_0
- lz4-c=1.9.3=h9c3ff4c_1
- markdown=3.3.6=pyhd8ed1ab_0
- markupsafe=2.1.0=py38h0a891b7_1
- matchms=0.14.0=pyh5e36f6f_0
- matplotlib-base=3.5.1=py38hf4fb855_0
- matplotlib-inline=0.1.3=pyhd8ed1ab_0
- mistune=0.8.4=py38h497a2fe_1005
- mkl=2022.0.1=h8d4b97c_803
- multidict=6.0.2=py38h497a2fe_0
- munkres=1.0.7=py_1
- nbclassic=0.3.6=pyhd8ed1ab_0
- nbclient=0.5.13=pyhd8ed1ab_0
- nbconvert=6.4.4=py38h578d9bd_0
- nbformat=5.2.0=pyhd8ed1ab_0
- ncurses=6.3=h9c3ff4c_0
- nest-asyncio=1.5.4=pyhd8ed1ab_0
- networkx=2.7.1=pyhd8ed1ab_0
- ninja=1.10.2=h4bd325d_1
- notebook=6.4.9=pyha770c72_0
- notebook-shim=0.1.0=pyhd8ed1ab_0
- numba=0.51.2=py38hc5bc63f_0
- numpy=1.22.3=py38h05e7239_0
- oauthlib=3.2.0=pyhd8ed1ab_0
- olefile=0.46=pyh9f0ad1d_1
- openjpeg=2.4.0=hb52868f_1
- openssl=1.1.1l=h7f98852_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.4.1=py38h43a58ef_0
- pandoc=2.17.1.1=ha770c72_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- pathtools=0.1.2=py_1
- pcre=8.45=h9c3ff4c_0
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pickydict=0.4.0=pyhd8ed1ab_0
- pillow=8.2.0=py38ha0e1e83_1
- pip=22.0.4=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- prometheus_client=0.13.1=pyhd8ed1ab_0
- promise=2.3=py38h578d9bd_5
- prompt-toolkit=3.0.27=pyha770c72_0
- protobuf=3.19.4=py38h709712a_0
- psutil=5.9.0=py38h497a2fe_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycairo=1.21.0=py38h9c00e7a_0
- pycparser=2.21=pyhd8ed1ab_0
- pydeprecate=0.3.2=pyhd8ed1ab_0
- pygments=2.11.2=pyhd8ed1ab_0
- pyjwt=2.3.0=pyhd8ed1ab_1
- pyopenssl=22.0.0=pyhd8ed1ab_0
- pyparsing=3.0.7=pyhd8ed1ab_0
- pyrsistent=0.18.1=py38h497a2fe_0
- pysocks=1.7.1=py38h578d9bd_4
- pyteomics=4.5.3=pyh5e36f6f_0
- python=3.8.2=he5300dc_7_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.8=2_cp38
- pytorch=1.10.2=cpu_py38hb2150b6_1
- pytorch-lightning=1.5.10=pyhd8ed1ab_0
- pytz=2021.3=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=6.0=py38h497a2fe_3
- pyzmq=22.3.0=py38h2035c66_1
- rdkit=2021.09.5=py38ha848acd_0
- readline=8.1=h46c0cb4_0
- regex=2022.3.2=py38h0a891b7_0
- reportlab=3.5.68=py38hadf75a6_1
- requests=2.27.1=pyhd8ed1ab_0
- requests-oauthlib=1.3.1=pyhd8ed1ab_0
- rsa=4.8=pyhd8ed1ab_0
- sacremoses=0.0.46=pyhd8ed1ab_0
- scipy=1.8.0=py38h56a6a73_1
- send2trash=1.8.0=pyhd8ed1ab_0
- sentry-sdk=1.5.8=pyhd8ed1ab_0
- setproctitle=1.2.2=py38h497a2fe_1
- setuptools=59.5.0=py38h578d9bd_0
- shortuuid=1.0.8=py38h578d9bd_0
- six=1.16.0=pyh6c4a22f_0
- sleef=3.5.1=h9b69904_2
- smart_open=5.2.1=pyhd8ed1ab_0
- smmap=3.0.5=pyh44b312d_0
- sniffio=1.2.0=py38h578d9bd_2
- soupsieve=2.3.1=pyhd8ed1ab_0
- spec2vec=0.5.0=pyh7b7c402_0
- sqlalchemy=1.4.32=py38h0a891b7_0
- sqlite=3.37.0=h9cd32fc_0
- stack_data=0.2.0=pyhd8ed1ab_0
- tbb=2021.5.0=h4bd325d_0
- tensorboard=2.8.0=pyhd8ed1ab_1
- tensorboard-data-server=0.6.0=py38h3e25421_1
- tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
- termcolor=1.1.0=py_2
- terminado=0.13.3=py38h578d9bd_0
- testpath=0.6.0=pyhd8ed1ab_0
- tk=8.6.12=h27826a3_0
- tokenizers=0.10.3=py38hb63a372_1
- torchmetrics=0.7.2=pyhd8ed1ab_0
- tornado=6.1=py38h497a2fe_2
- tqdm=4.63.0=pyhd8ed1ab_0
- traitlets=5.1.1=pyhd8ed1ab_0
- transformers=4.16.2=pyhd8ed1ab_0
- typing-extensions=4.1.1=hd8ed1ab_0
- typing_extensions=4.1.1=pyha770c72_0
- unicodedata2=14.0.0=py38h497a2fe_0
- urllib3=1.26.8=pyhd8ed1ab_1
- wandb=0.12.11=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- websocket-client=1.3.1=pyhd8ed1ab_0
- werkzeug=2.0.3=pyhd8ed1ab_1
- wheel=0.37.1=pyhd8ed1ab_0
- wrapt=1.14.0=py38h0a891b7_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h7f98852_2
- yarl=1.7.2=py38h497a2fe_1
- yaspin=2.1.0=pyhd8ed1ab_0
- zeromq=4.3.4=h9c3ff4c_1
- zipp=3.7.0=pyhd8ed1ab_1
- zlib=1.2.11=h36c2ea0_1013
- zstd=1.4.9=ha95c52a_0
prefix: /home/xtracko/miniconda3/envs/raims