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requirements.txt
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requirements.txt
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# Avoids "cannot import name 'define' from 'attr' "
attrs==21.4.0
# Array computing
numpy==1.23.0
# Composable command line interface toolkit
click==8.1.3
# Parallel computing libary
dask==2022.6.1
# Lightweight pipelining with Python functions
joblib==1.1.0
# Python client for GBIF API
pygbif==0.6.1
# Sequence simulation along phylogenies according to continuous-time Markov models
Pyvolve==1.0.3
# Read and write GIS
rasterio==1.3b2
# Read and write spatial data
Fiona==1.8.21
# Geographic dataframes
geopandas==0.11.0
# machine learning
scikit-learn==1.1.1
# Light Gradient Boosting Machine
lightgbm==3.3.2
# regularizing gradient boosting
xgboost==1.6.1
# Utilities for applying scikit-learn to spatial datasets
pyimpute==0.3
# smart progress meter
tqdm==4.64.0
# Python bindings for the Qt platform (mayavi dep.)
# Bug on Ub.22.04 but avoids AttributeError: 'Timer' object has no attribute 'start' on other OS
pyqt5==5.15.7
# Image processing capabilities (mayavi dep.)
pillow==9.1.1
# interactive visualization of 3D data.
mayavi==4.7.4
# python wrapper for Xvfb, Xephyr and Xvnc.
PyVirtualDisplay==3.0
# python interface to read/write image data: animated images, volumetric data, and scientific formats.
imageio==2.19.3
# python FFMPEG wrapper.
imageio-ffmpeg==0.4.7