The variants are almost Silent

[DayTimeMouse]

Hi,

When I use read.maf to read maf file, but almost variants are silent(silent variants/all variants: 16874/17013).

I am unsure about that is annotation problem or something.
df = read.maf('filter.vep.maf')

plotmafSummary(maf = df,
               rmOutlier = T,
               showBarcodes = F,
               textSize = 0.4,
               addStat = 'median',
               dashboard = TRUE,
               titvRaw = FALSE)

-Reading
-Validating
-Silent variants: 16874 
-Summarizing
-Processing clinical data
--Missing clinical data
-Finished in 0.360s elapsed (3.499s cpu)

Best regards.

[PoisonAlien]

Hi,

It's hard to know without seeing the data. If it is WGS, I guess it is possible.