use unsigned int to do byte swap (misaligned memory access) #128
Workflow file for this run
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| name: ubuntu_openmpi | |
| on: | |
| push: | |
| branches: master | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.1' | |
| - 'docs/*' | |
| - 'test/test_installed/*' | |
| pull_request: | |
| branches: master | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.1' | |
| - 'docs/*' | |
| - 'test/test_installed/*' | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install automake autoconf libtool libtool-bin m4 | |
| # zlib | |
| sudo apt-get install zlib1g-dev | |
| # mpi | |
| sudo apt-get install openmpi-bin openmpi-common libopenmpi-dev libgtk2.0-dev | |
| echo "---- location of OpenMPI C compiler ----" | |
| which mpicc | |
| - name: Build PnetCDF | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| autoreconf -i | |
| mkdir -p /dev/shm/pnetcdf_output | |
| ./configure --enable-option-checking=fatal \ | |
| --enable-profiling \ | |
| pnc_ac_debug=yes \ | |
| --enable-burst_buffering \ | |
| --enable-subfiling \ | |
| --enable-shared \ | |
| --enable-thread-safe \ | |
| --with-pthread \ | |
| TESTMPIRUN="mpiexec --oversubscribe -n NP" \ | |
| TESTOUTDIR=/dev/shm/pnetcdf_output | |
| make -j 8 tests | |
| - name: Print config.log | |
| if: ${{ always() }} | |
| run: | | |
| cat ${GITHUB_WORKSPACE}/config.log | |
| - name: make check | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| make check | |
| - name: Print test log files | |
| if: ${{ always() }} | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| fname=`find src test examples benchmarks -type f -name "*.log"` | |
| for f in $fname ; do \ | |
| bname=`basename $f` ; \ | |
| if test "x$bname" != xconfig.log ; then \ | |
| echo "-------- dump $f ----------------------------" ; \ | |
| cat $f ; \ | |
| fi ; \ | |
| done | |
| - name: make ptests | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| make ptests | |
| - name: make distcheck | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| make -j 8 distcheck DISTCHECK_CONFIGURE_FLAGS="--silent TESTOUTDIR=/dev/shm/pnetcdf_output" | |
| - name: Cleanup | |
| if: ${{ always() }} | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| make -s distclean | |
| rm -rf /dev/shm/pnetcdf_output | |