From 085e9dcc2e1635a1cd852899f7fb0690797d88b4 Mon Sep 17 00:00:00 2001 From: Josh McVey Date: Mon, 8 Jan 2024 17:17:34 -0600 Subject: [PATCH] Analyses Snapshot Testing (#14277) --- .eslintignore | 2 + .github/workflows/analyses-snapshot-test.yaml | 71 + .github/workflows/app-testing-lint.yaml | 12 +- app-testing/.gitignore | 1 + app-testing/Makefile | 40 +- app-testing/Pipfile | 31 +- app-testing/Pipfile.lock | 1053 +- app-testing/README.md | 41 +- app-testing/analysis_results/.keep-me | 0 app-testing/automation/data/protocol.py | 2 +- app-testing/automation/data/protocol_files.py | 57 +- app-testing/automation/data/protocols.py | 184 +- app-testing/automation/driver/base.py | 26 +- app-testing/automation/pages/app_settings.py | 4 +- .../automation/pages/device_landing.py | 29 +- .../pages/labware_position_check.py | 24 +- app-testing/automation/pages/labware_setup.py | 16 +- app-testing/automation/pages/module_setup.py | 20 +- .../automation/pages/setup_calibration.py | 12 +- .../ci-tools/ot2_with_all_modules.yaml | 65 - app-testing/citools/Dockerfile | 26 + app-testing/citools/__init__.py | 1 + app-testing/citools/generate_analyses.py | 268 + .../linux_get_chromedriver.sh | 0 .../mac_get_chromedriver.sh | 0 .../windows_get_chromedriver.ps1 | 0 app-testing/conftest.py | 9 +- app-testing/example.env | 70 +- ...6_AnalysisError_AccessToFixedTrashProp.py} | 0 ...None_2_16_AnalysisError_TrashBinInCol2.py} | 0 ...nalysisError_TrashBinInStagingAreaCol3.py} | 0 ...nalysisError_TrashBinInStagingAreaCol4.py} | 0 ...ysisError_MagneticModuleInFlexProtocol.py} | 0 ...one_TM_2_16_AnalysisError_ModuleInCol2.py} | 0 ..._AnalysisError_ModuleInStagingAreaCol3.py} | 0 ..._AnalysisError_ModuleInStagingAreaCol4.py} | 0 ...C_TM_2_15_ABR3_Illumina_DNA_Enrichment.py} | 1 - ...M_2_15_ABR3_Illumina_DNA_Enrichment_v4.py} | 11 +- ..._MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x.py} | 0 ...e_2_15_ABR_Simple_Normalize_Long_Right.py} | 13 +- ...2_16_AnalysisError_DropTipsWithNoTrash.py} | 1 - ..._AnalysisError_DropLabwareIntoTrashBin.py} | 0 ...ER_HS_TM_TC_MB_2_16_DeckConfiguration1.py} | 33 +- ..._MB_2_16_DeckConfiguration1_NoFixtures.py} | 25 +- ...C_MB_2_16_DeckConfiguration1_NoModules.py} | 33 +- ...DeckConfiguration1_NoModulesNoFixtures.py} | 25 +- ...1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke.py} | 1 - ...BR5_6_HDQ_Bacteria_ParkTips_96_channel.py} | 4 +- ...00_96_HS_TM_MM_2_15_MagMaxRNACells96Ch.py} | 14 +- ..._6_Illumina_DNA_Prep_96x_Head_PART_III.py} | 0 ..._6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR.py} | 5 +- ...lysisError_ModuleAndWasteChuteConflict.py} | 1 - ..._96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria.py} | 18 +- ...AnalysisError_OT2PipetteInFlexProtocol.py} | 0 ...ht_None_2_15_ABRKAPALibraryQuantLongv2.py} | 154 +- .../py/OT2_P20S_None_2_7_Walkthrough.py | 5 +- .../py/OT2_P300MLeft_MM_TM_2_4_Zymo.py | 7 +- .../protocols/py/OT2_P300S_Twinning_Error.py | 1 - app-testing/print_protocols.py | 7 +- app-testing/pyproject.toml | 9 +- app-testing/pytest.ini | 3 +- ...AnalysisError_AccessToFixedTrashProp].json | 73 + ...ne_2_16_AnalysisError_TrashBinInCol2].json | 73 + ...lysisError_TrashBinInStagingAreaCol3].json | 147 + ...lysisError_TrashBinInStagingAreaCol4].json | 73 + ...isError_MagneticModuleInFlexProtocol].json | 73 + ...e_TM_2_16_AnalysisError_ModuleInCol2].json | 73 + ...nalysisError_ModuleInStagingAreaCol3].json | 611 + ...nalysisError_ModuleInStagingAreaCol4].json | 73 + ...TM_2_15_ABR3_Illumina_DNA_Enrichment].json | 10145 ++ ...2_15_ABR3_Illumina_DNA_Enrichment_v4].json | 12000 ++ ...M_TC_2_15_ABR4_Illumina_DNA_Prep_24x].json | 28439 +++ ...2_15_ABR_Simple_Normalize_Long_Right].json | 95783 ++++++++++ ...16_AnalysisError_DropTipsWithNoTrash].json | 1425 + ...nalysisError_DropLabwareIntoTrashBin].json | 1384 + ..._HS_TM_TC_MB_2_16_DeckConfiguration1].json | 12989 ++ ...B_2_16_DeckConfiguration1_NoFixtures].json | 10409 ++ ...ckConfiguration1_NoModulesNoFixtures].json | 8583 + ...MB_2_16_DeckConfiguration1_NoModules].json | 11163 ++ ...00_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke].json | 12660 ++ ...5_6_HDQ_Bacteria_ParkTips_96_channel].json | 13455 ++ ..._96_HS_TM_MM_2_15_MagMaxRNACells96Ch].json | 13255 ++ ..._Illumina_DNA_Prep_96x_Head_PART_III].json | 5852 + ..._IDT_xGen_EZ_96x_Head_PART_I_III_ABR].json | 11133 ++ ...sisError_ModuleAndWasteChuteConflict].json | 1825 + ...6_HS_TM_2_15_Quick_Zymo_RNA_Bacteria].json | 13334 ++ ...alysisError_OT2PipetteInFlexProtocol].json | 1247 + ..._None_2_15_ABRKAPALibraryQuantLongv2].json | 140761 +++++++++++++++ ...ython310SyntaxRobotAnalysisOnlyError].json | 100 + ...OT2_None_None_2_13_PythonSyntaxError].json | 87 + ...2_P1000SLeft_None_6_1_SimpleTransfer].json | 1907 + ...[OT2_P10S_P300M_TC1_TM_MM_2_11_Swift].json | 13955 ++ ...0SRight_None_6_1_SimpleTransferError].json | 1849 + ...rough][OT2_P20S_None_2_7_Walkthrough].json | 4282 + ..._P300M_HS_6_1_HS_WithCollision_Error].json | 5323 + ..._NoMods_6_1_TransferReTransferLiquid].json | 10536 ++ ...4_Zymo][OT2_P300MLeft_MM_TM_2_4_Zymo].json | 68439 +++++++ ...P20S_2_16_aspirateDispenseMix0Volume].json | 2837 + ...T2_P300M_P20S_HS_6_1_Smoke620release].json | 8465 + ...M_P20S_MM_HS_TD_TC_6_1_AllMods_Error].json | 7371 + ...P300M_P20S_MM_TM_TC1_5_2_6_PD40Error].json | 7095 + ...[OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40].json | 9621 + ...20S_NoMod_6_1_MixTransferManyLiquids].json | 5315 + ...][OT2_P300M_P20S_None_2_12_FailOnRun].json | 2656 + ...P300M_P20S_TC_HS_TM_2_13_SmokeTestV3].json | 12460 ++ ...P300M_P20S_TC_HS_TM_2_14_SmokeTestV3].json | 12664 ++ ...P300M_P20S_TC_HS_TM_2_15_SmokeTestV3].json | 15223 ++ ...P300M_P20S_TC_HS_TM_2_16_SmokeTestV3].json | 15439 ++ ...S_TM_2_16_aspirateDispenseMix0Volume].json | 2787 + ...M_P20S_TC_MM_TM_2_13_Smoke620Release].json | 9839 + ...300S_HS_6_1_HS_NormalUseWithTransfer].json | 6407 + ...P300SG1_None_5_2_6_Gen1PipetteSimple].json | 5778 + ...t_MM1_MM_2_2_EngageMagHeightFromBase].json | 1577 + ...Mix][OT2_P300SLeft_MM1_MM_TM_2_3_Mix].json | 3350 + ...2_P300SLeft_MM_TM_TM_5_2_6_MOAMTemps].json | 2546 + ...r][OT2_P300S_Thermocycler_Moam_Error].json | 2758 + ...ning_Error][OT2_P300S_Twinning_Error].json | 2790 + app-testing/tests/analyses_snapshot_test.py | 116 + app-testing/tests/app_settings_test.py | 5 +- app-testing/tests/protocol_analyze_test.py | 14 +- app-testing/tests/protocol_landing_test.py | 5 +- 121 files changed, 652068 insertions(+), 1001 deletions(-) create mode 100644 .github/workflows/analyses-snapshot-test.yaml create mode 100644 app-testing/analysis_results/.keep-me delete mode 100644 app-testing/ci-tools/ot2_with_all_modules.yaml create mode 100644 app-testing/citools/Dockerfile create mode 100644 app-testing/citools/__init__.py create mode 100644 app-testing/citools/generate_analyses.py rename app-testing/{ci-tools => citools}/linux_get_chromedriver.sh (100%) rename app-testing/{ci-tools => citools}/mac_get_chromedriver.sh (100%) rename app-testing/{ci-tools => citools}/windows_get_chromedriver.ps1 (100%) rename app-testing/files/protocols/py/{OT3_None_None_2_16_AnalysisError_AccessToFixedTrashProp.py => Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp.py} (100%) rename app-testing/files/protocols/py/{OT3_None_None_2_16_AnalysisError_TrashBinInCol2.py => Flex_None_None_2_16_AnalysisError_TrashBinInCol2.py} (100%) rename app-testing/files/protocols/py/{OT3_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3.py => Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3.py} (100%) rename app-testing/files/protocols/py/{OT3_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4.py => Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4.py} (100%) rename app-testing/files/protocols/py/{OT3_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol.py => Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol.py} (100%) rename app-testing/files/protocols/py/{OT3_None_None_TM_2_16_AnalysisError_ModuleInCol2.py => Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2.py} (100%) rename app-testing/files/protocols/py/{OT3_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3.py => Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3.py} (100%) rename app-testing/files/protocols/py/{OT3_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4.py => Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4.py} (100%) rename app-testing/files/protocols/py/{OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment.py => Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment.py} (99%) rename app-testing/files/protocols/py/{OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4.py => Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4.py} (99%) rename app-testing/files/protocols/py/{OT3_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x.py => Flex_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x.py} (100%) rename app-testing/files/protocols/py/{OT3_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right.py => Flex_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right.py} (94%) rename app-testing/files/protocols/py/{OT3_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash.py => Flex_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash.py} (99%) rename app-testing/files/protocols/py/{OT3_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin.py => Flex_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin.py} (100%) rename app-testing/files/protocols/py/{OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1.py => Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1.py} (84%) rename app-testing/files/protocols/py/{OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures.py => Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures.py} (84%) rename app-testing/files/protocols/py/{OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules.py => Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules.py} (81%) rename app-testing/files/protocols/py/{OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures.py => Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures.py} (81%) rename app-testing/files/protocols/py/{OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke.py => Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke.py} (99%) rename app-testing/files/protocols/py/{OT3_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel.py => Flex_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel.py} (99%) rename app-testing/files/protocols/py/{OT3_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch.py => Flex_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch.py} (97%) rename app-testing/files/protocols/py/{OT3_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III.py => Flex_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III.py} (100%) rename app-testing/files/protocols/py/{OT3_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR.py => Flex_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR.py} (99%) rename app-testing/files/protocols/py/{OT3_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict.py => Flex_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict.py} (99%) rename app-testing/files/protocols/py/{OT3_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria.py => Flex_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria.py} (96%) rename app-testing/files/protocols/py/{OT3_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol.py => Flex_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol.py} (100%) rename app-testing/files/protocols/py/{OT3_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2.py => Flex_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2.py} (87%) create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp][Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_TrashBinInCol2][Flex_None_None_2_16_AnalysisError_TrashBinInCol2].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3][Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4][Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol][Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2][Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3][Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4][Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment][Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4][Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x][Flex_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right][Flex_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash][Flex_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin][Flex_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1][Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures][Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures][Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules][Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke][Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel][Flex_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch][Flex_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III][Flex_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR][Flex_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict][Flex_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria][Flex_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol][Flex_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2][Flex_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_None_None_2_12_Python310SyntaxRobotAnalysisOnlyError][OT2_None_None_2_12_Python310SyntaxRobotAnalysisOnlyError].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_None_None_2_13_PythonSyntaxError][OT2_None_None_2_13_PythonSyntaxError].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P1000SLeft_None_6_1_SimpleTransfer][OT2_P1000SLeft_None_6_1_SimpleTransfer].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P10S_P300M_TC1_TM_MM_2_11_Swift][OT2_P10S_P300M_TC1_TM_MM_2_11_Swift].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P20SRight_None_6_1_SimpleTransferError][OT2_P20SRight_None_6_1_SimpleTransferError].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P20S_None_2_7_Walkthrough][OT2_P20S_None_2_7_Walkthrough].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P20S_P300M_HS_6_1_HS_WithCollision_Error][OT2_P20S_P300M_HS_6_1_HS_WithCollision_Error].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P20S_P300M_NoMods_6_1_TransferReTransferLiquid][OT2_P20S_P300M_NoMods_6_1_TransferReTransferLiquid].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300MLeft_MM_TM_2_4_Zymo][OT2_P300MLeft_MM_TM_2_4_Zymo].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_2_16_aspirateDispenseMix0Volume][OT2_P300M_P20S_2_16_aspirateDispenseMix0Volume].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_HS_6_1_Smoke620release][OT2_P300M_P20S_HS_6_1_Smoke620release].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_MM_HS_TD_TC_6_1_AllMods_Error][OT2_P300M_P20S_MM_HS_TD_TC_6_1_AllMods_Error].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40Error][OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40Error].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40][OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_NoMod_6_1_MixTransferManyLiquids][OT2_P300M_P20S_NoMod_6_1_MixTransferManyLiquids].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_None_2_12_FailOnRun][OT2_P300M_P20S_None_2_12_FailOnRun].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_TC_HS_TM_2_13_SmokeTestV3][OT2_P300M_P20S_TC_HS_TM_2_13_SmokeTestV3].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_TC_HS_TM_2_14_SmokeTestV3][OT2_P300M_P20S_TC_HS_TM_2_14_SmokeTestV3].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_TC_HS_TM_2_15_SmokeTestV3][OT2_P300M_P20S_TC_HS_TM_2_15_SmokeTestV3].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_TC_HS_TM_2_16_SmokeTestV3][OT2_P300M_P20S_TC_HS_TM_2_16_SmokeTestV3].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_TC_HS_TM_2_16_aspirateDispenseMix0Volume][OT2_P300M_P20S_TC_HS_TM_2_16_aspirateDispenseMix0Volume].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_TC_MM_TM_2_13_Smoke620Release][OT2_P300M_P20S_TC_MM_TM_2_13_Smoke620Release].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P300S_HS_6_1_HS_NormalUseWithTransfer][OT2_P300M_P300S_HS_6_1_HS_NormalUseWithTransfer].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300SG1_None_5_2_6_Gen1PipetteSimple][OT2_P300SG1_None_5_2_6_Gen1PipetteSimple].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300SLeft_MM1_MM_2_2_EngageMagHeightFromBase][OT2_P300SLeft_MM1_MM_2_2_EngageMagHeightFromBase].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300SLeft_MM1_MM_TM_2_3_Mix][OT2_P300SLeft_MM1_MM_TM_2_3_Mix].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300SLeft_MM_TM_TM_5_2_6_MOAMTemps][OT2_P300SLeft_MM_TM_TM_5_2_6_MOAMTemps].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300S_Thermocycler_Moam_Error][OT2_P300S_Thermocycler_Moam_Error].json create mode 100644 app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300S_Twinning_Error][OT2_P300S_Twinning_Error].json create mode 100644 app-testing/tests/analyses_snapshot_test.py diff --git a/.eslintignore b/.eslintignore index 1444a777aa1..6524a88895f 100644 --- a/.eslintignore +++ b/.eslintignore @@ -31,3 +31,5 @@ hardware-testing/** # app-testing don't format the json protocols app-testing/files +# app testing don't format the snapshots +app-testing/tests/__snapshots__ diff --git a/.github/workflows/analyses-snapshot-test.yaml b/.github/workflows/analyses-snapshot-test.yaml new file mode 100644 index 00000000000..bb11837ca6c --- /dev/null +++ b/.github/workflows/analyses-snapshot-test.yaml @@ -0,0 +1,71 @@ +name: Analyses Snapshot Test + +on: + workflow_dispatch: + inputs: + TARGET: + description: 'Target branch or tag' + required: true + default: 'edge' + TEST_SOURCE: + description: 'Target for the test code' + required: true + default: 'edge' + schedule: + - cron: '0 7-8 * * *' # Random time between 2-3 AM EST (7-8 AM UTC) + +jobs: + build-and-test: + runs-on: ubuntu-latest + env: + TARGET: ${{ github.event.inputs.TARGET || 'edge' }} + TEST_SOURCE: ${{ github.event.inputs.TEST_SOURCE || 'edge' }} + + steps: + - name: Checkout Repository + uses: actions/checkout@v4 + with: + ref: ${{ env.TEST_SOURCE }} + + - name: Docker Build + working-directory: app-testing + run: make build-opentrons-analysis + + - name: Set up Python 3.12 + uses: actions/setup-python@v5 + with: + python-version: '3.12' + cache: 'pipenv' + cache-dependency-path: app-testing/Pipfile.lock + + - name: Setup Python Dependencies + working-directory: app-testing + run: make setup + + - name: Run Test + id: run_test + working-directory: app-testing + run: make snapshot-test + + - name: Upload Report + if: '!cancelled()' + uses: actions/upload-artifact@v4 + with: + name: test-report + path: app-testing/results/ + + - name: Handle Test Failure + if: failure() + working-directory: app-testing + run: make snapshot-test-update + + - name: Create Snapshot update Request + if: failure() + uses: peter-evans/create-pull-request@v5 + with: + commit-message: 'fix(app-testing): snapshot failure capture' + title: 'Evaluate Analyses Snapshot Update ${{ env.TARGET }}' + body: 'This PR is an automated snapshot update request. Please review the changes and merge if they are acceptable or find you bug and fix it.' + branch: 'app-testing/${{ env.TARGET }}-from-${{ env.TEST_SOURCE}}' + base: ${{ env.TEST_SOURCE}} + diff --git a/.github/workflows/app-testing-lint.yaml b/.github/workflows/app-testing-lint.yaml index ec9b45bfe6c..446cea74306 100644 --- a/.github/workflows/app-testing-lint.yaml +++ b/.github/workflows/app-testing-lint.yaml @@ -19,20 +19,18 @@ jobs: lint: name: 'app-testing lint' timeout-minutes: 5 - runs-on: 'ubuntu-22.04' + runs-on: 'ubuntu-latest' steps: - name: Checkout opentrons repo - uses: 'actions/checkout@v3' + uses: 'actions/checkout@v4' - name: Setup Python - uses: 'actions/setup-python@v4' + uses: 'actions/setup-python@v5' with: - python-version: '3.11' + python-version: '3.12' cache: 'pipenv' cache-dependency-path: app-testing/Pipfile.lock - - name: Install Pipenv - run: pip install -U pipenv - - name: Pipenv Install + - name: Setup id: install working-directory: ./app-testing run: make setup diff --git a/app-testing/.gitignore b/app-testing/.gitignore index 6ba4abe0128..8c771199b29 100644 --- a/app-testing/.gitignore +++ b/app-testing/.gitignore @@ -1,2 +1,3 @@ .env results +analysis_results/*.json diff --git a/app-testing/Makefile b/app-testing/Makefile index 3592ef29cdd..40abbc0e7aa 100644 --- a/app-testing/Makefile +++ b/app-testing/Makefile @@ -1,22 +1,22 @@ .PHONY: black black: - pipenv run python -m black . + python -m pipenv run python -m black . .PHONY: black-check black-check: - pipenv run python -m black . --check + python -m pipenv run python -m black . --check .PHONY: ruff ruff: - pipenv run python -m ruff . --fix + python -m pipenv run python -m ruff . --fix --unsafe-fixes .PHONY: ruff-check ruff-check: - pipenv run python -m ruff . + python -m pipenv run python -m ruff . .PHONY: mypy mypy: - pipenv run python -m mypy conftest.py automation tests + python -m pipenv run python -m mypy conftest.py automation tests citools .PHONY: lint lint: @@ -32,19 +32,19 @@ format: .PHONY: test-ci test-ci: - pipenv run python -m pytest -m "emulated_alpha" + python -m pipenv run python -m pytest -m "emulated_alpha" .PHONY: test-protocol-analysis test-protocol-analysis: pipenv run python -m pytest -v tests/protocol_analyze_test.py .PHONY: setup -setup: - pipenv install +setup: install-pipenv + python -m pipenv install .PHONY: teardown teardown: - pipenv --rm + python -m pipenv --rm .PHONY: format-readme format-readme: @@ -52,4 +52,24 @@ format-readme: .PHONY: print-protocols print-protocols: - pipenv run python print_protocols.py + python -m pipenv run python print_protocols.py + +.PHONY: install-pipenv +install-pipenv: + python -m pip install -U pipenv + +.PHONY: snapshot-test +snapshot-test: + python -m pipenv run pytest -k analyses_snapshot_test -vv + +.PHONY: snapshot-test-update +snapshot-test-update: + python -m pipenv run pytest -k analyses_snapshot_test --snapshot-update + +TARGET ?= edge + +.PHONY: build-opentrons-analysis +build-opentrons-analysis: + @echo "Building docker image for $(TARGET)" + @echo "If you want to build a different version, run 'make build-docker TARGET='" + docker build --build-arg OPENTRONS_VERSION=$(TARGET) -t opentrons-analysis:$(TARGET) citools/. diff --git a/app-testing/Pipfile b/app-testing/Pipfile index 12dfe7880a0..6b584a7fb4a 100644 --- a/app-testing/Pipfile +++ b/app-testing/Pipfile @@ -4,21 +4,24 @@ url = "https://pypi.org/simple" verify_ssl = true [packages] -pytest = "==7.2.0" -black = "==22.12.0" -selenium = "==4.7.2" -importlib-metadata = "==5.0.0" -requests = "==2.28.1" -python-dotenv = "==0.21.0" -pytest-xdist = "==3.0.2" -mypy = "==0.991" -types-requests = "==2.28.11.5" -rich = "==13.0.0" +pytest = "==7.4.3" +black = "==23.11.0" +selenium = "==4.15.2" +importlib-metadata = "==6.8.0" +requests = "==2.31.0" +python-dotenv = "==1.0.0" +pytest-xdist = "==3.5.0" +mypy = "==1.7.1" +types-requests = "==2.31.0.10" +rich = "==13.7.0" atomicwrites = "==1.4.1" pyreadline3 = "==3.4.1" -pydantic = "==1.10.4" -pygithub = "==1.57" -ruff = "==0.0.236" +pydantic = "==2.5.2" +pygithub = "==2.1.1" +ruff = "==0.1.6" +docker = "==6.1.3" +syrupy = "==4.6.0" +pytest-html = "==4.1.1" [requires] -python_version = "3.11" +python_version = "3.12" diff --git a/app-testing/Pipfile.lock b/app-testing/Pipfile.lock index 38341adc09c..e6d0c62ad48 100644 --- a/app-testing/Pipfile.lock +++ b/app-testing/Pipfile.lock @@ -1,11 +1,11 @@ { "_meta": { "hash": { - "sha256": "34f82d64c90df6aff09f96dc7c22e861d0b7d9826cfbdcea9e1e1eb287aefb1f" + "sha256": "833b9fb969bfaeeae450d8fdff72fe005f8b2857541ba692965d2177ff6004de" }, "pipfile-spec": 6, "requires": { - "python_version": "3.11" + "python_version": "3.12" }, "sources": [ { @@ -16,13 +16,13 @@ ] }, "default": { - "async-generator": { + "annotated-types": { "hashes": [ - "sha256:01c7bf666359b4967d2cda0000cc2e4af16a0ae098cbffcb8472fb9e8ad6585b", - "sha256:6ebb3d106c12920aaae42ccb6f787ef5eefdcdd166ea3d628fa8476abe712144" + "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43", + "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d" ], - "markers": "python_version >= '3.5'", - "version": "==1.10" + "markers": "python_version >= '3.8'", + "version": "==0.6.0" }, "atomicwrites": { "hashes": [ @@ -33,153 +33,259 @@ }, "attrs": { "hashes": [ - "sha256:29e95c7f6778868dbd49170f98f8818f78f3dc5e0e37c0b1f474e3561b240836", - "sha256:c9227bfc2f01993c03f68db37d1d15c9690188323c067c641f1a35ca58185f99" + "sha256:1f28b4522cdc2fb4256ac1a020c78acf9cba2c6b461ccd2c126f3aa8e8335d04", + "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015" ], - "markers": "python_version >= '3.6'", - "version": "==22.2.0" + "markers": "python_version >= '3.7'", + "version": "==23.1.0" }, "black": { "hashes": [ - "sha256:101c69b23df9b44247bd88e1d7e90154336ac4992502d4197bdac35dd7ee3320", - "sha256:159a46a4947f73387b4d83e87ea006dbb2337eab6c879620a3ba52699b1f4351", - 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"markers": "python_version >= '3.7'", - "version": "==3.11.0" + "markers": "python_version >= '3.8'", + "version": "==3.17.0" } }, "develop": {} diff --git a/app-testing/README.md b/app-testing/README.md index 19e8f937ee3..9327b2814af 100644 --- a/app-testing/README.md +++ b/app-testing/README.md @@ -11,31 +11,35 @@ Slices of the tests will be selected as candidates for automation and then perfo ## Steps 1. Have pyenv installed per [DEV_SETUP.md](../DEV_SETUP.md) - 1. Install python 3.11 + 1. Install python 3.12 2. Install the Opentrons application on your machine. 1. 2. This could also be done by building the installer on a branch and installing the App. 1. for Mac 1. `make -C app-shell dist-osx` 3. Install Chromedriver - = 1. in the app-testing directory 1. `sudo ./ci-tools/mac_get_chromedriver.sh 21.3.1` per the version of electron in the repository root package.json (`/opentrons/package.json`) for electron 1. Windows `sudo .\ci-tools\windows_get_chromedriver.ps1 -version 21.3.1` 1. if you experience `wget: command not found` 1. brew install wget and try again 2. when you run `chromedriver --version` 1. It should work 2. It should output the below. The chromedriver version must match Electron version we build into the App. 1. ChromeDriver 106.0.5249.181 (7e86549ea18ccbc17d7b600e3cd4190f45db35c7-refs/heads/main@{#1045491}) + 1. in the app-testing directory + 2. `sudo ./citools/{YOUR_OS}_get_chromedriver.sh 21.3.1` passing the version of electron in the repository root [package.json](`/opentrons/package.json`) for electron + 3. windows example using sudo (scoop install sudo): `sudo .\citools\windows_get_chromedriver.ps1 21.3.1` + 4. run `chromedriver --version` to verify 4. Create .env from example.env `cp example.env .env` 1. Fill in values (if there are secrets) 2. Make sure the paths work on your machine 5. Install pipenv globally against the python version you are using in this module. 1. pip install -U pipenv + 2. note: the rest of the monorepo uses pipenv but pinned at `pipenv==2021.5.29` 6. In the app-testing directory (make, python, pipenv required on your path) 1. `make teardown` 2. `make setup` 7. Run all tests 1. `make test` 8. Run specific test(s) - 1. `pipenv run python -m pytest -k test_labware_landing` - 1. [See docs on pytest -k flag](https://docs.pytest.org/en/6.2.x/usage.html#specifying-tests-selecting-tests) + 1. `pipenv run python -m pytest -k protocol_analyze_test` + 1. [See docs on pytest -k flag](https://docs.pytest.org/en/7.4.x/usage.html#specifying-tests-selecting-tests) ## Tools -python 3.11.0 - manage python with [pyenv](https://realpython.com/intro-to-pyenv) +python 3.12.0 - manage python with [pyenv](https://realpython.com/intro-to-pyenv) [pipenv](https://pipenv.pypa.io/en/latest/) ## Locator Tool @@ -59,26 +63,6 @@ pipenv run python -i locators.py > sometimes chromedriver does not cleanly exit. > `pkill -x chromedriver` -## Emulation - -We have made the choice to setup all test runs local and in CI against this emulator [config](./ci-tools/ot2_with_all_modules.yaml) - -To use locally setup the [emulator](https://github.com/Opentrons/opentrons-emulation) - -run our expected config - -```shell -make run file_path=$MONOREPOPATH/app-testing/ci-tools/ot2_with_all_modules.yaml -``` - -ctrl-c to stop - -remove the containers (this resets calibration, stopping them does not) - -```shell -make remove file_path=$MONOREPOPATH/app-testing/ci-tools/ot2_with_all_modules.yaml -``` - ## Gotchas - Only have 1 robot connected at once. @@ -89,9 +73,14 @@ make remove file_path=$MONOREPOPATH/app-testing/ci-tools/ot2_with_all_modules.ya The analysis test `pipenv run pytest -k test_analyses` is driven by the comma delimited string variable `APP_ANALYSIS_TEST_PROTOCOLS` in `.env` This allows us to run one or many. -### Adding protocols +### Adding protocols to the analysis test 1. add the protocol file named according to the naming convention in the files/protocols appropriate folder 1. add the protocol stem to `protocol_files.py` 1. add the protocol data as a property to `protocols.py` 1. run `make print-protocols` + +### Analyses Snapshot Test + +- run the Workflow Dispatch job + - `gh workflow run 'Analyses Snapshot Test' --ref 7.1-analyses-battery -f TARGET=v7.1.0-alpha.10 -f TEST_SOURCE=7.1-analyses-battery` diff --git a/app-testing/analysis_results/.keep-me b/app-testing/analysis_results/.keep-me new file mode 100644 index 00000000000..e69de29bb2d diff --git a/app-testing/automation/data/protocol.py b/app-testing/automation/data/protocol.py index 7301b3aebe2..bda7d4762d7 100644 --- a/app-testing/automation/data/protocol.py +++ b/app-testing/automation/data/protocol.py @@ -15,7 +15,7 @@ class Protocol(BaseModel): file_name: names = Field(description="file name not including extension") file_extension: Literal["json", "py"] = Field(description="file extension of the protocol") protocol_name: str = Field(description="the protocol name which will appear in the protocol name field in the app") - robot: Literal["OT-2", "OT-3"] = Field(description="the robot type which will appear in the robot field in the app") + robot: Literal["OT-2", "Flex"] = Field(description="the robot type which will appear in the robot field in the app") app_error: bool = Field(description="will analysis with the app raise an error") robot_error: bool = Field(description="will analysis with the robot raise an error") app_analysis_error: Optional[str] = Field(description="the exact error shown in the app popout", default=None) diff --git a/app-testing/automation/data/protocol_files.py b/app-testing/automation/data/protocol_files.py index 97e30cfb6a0..b9f89115900 100644 --- a/app-testing/automation/data/protocol_files.py +++ b/app-testing/automation/data/protocol_files.py @@ -30,32 +30,33 @@ "OT2_P300SLeft_MM_TM_TM_5_2_6_MOAMTemps", "OT2_P300SLeft_MM1_MM_2_2_EngageMagHeightFromBase", "OT2_P300SLeft_MM1_MM_TM_2_3_Mix", - "OT3_None_None_2_16_AnalysisError_AccessToFixedTrashProp", - "OT3_None_None_2_16_AnalysisError_TrashBinInCol2", - "OT3_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3", - "OT3_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4", - "OT3_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol", - "OT3_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3", - "OT3_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4", - "OT3_None_None_TM_2_16_AnalysisError_ModuleInCol2", - "OT3_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria", - "OT3_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash", - "OT3_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin", - "OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures", - "OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules", - "OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures", - "OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1", - "OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke", - "OT3_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel", - "OT3_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch", - "OT3_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III", - "OT3_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR", - "OT3_P1000_96_None_2_16_AnalysisError_TrashBinInStagingAreaCol3", - "OT3_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict", - "OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4", - "OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment", - "OT3_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x", - "OT3_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right", - "OT3_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol", - "OT3_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2", + "OT2_P300M_P20S_TC_HS_TM_2_16_aspirateDispenseMix0Volume", + "Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp", + "Flex_None_None_2_16_AnalysisError_TrashBinInCol2", + "Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3", + "Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4", + "Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol", + "Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3", + "Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4", + "Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2", + "Flex_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria", + "Flex_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash", + "Flex_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin", + "Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures", + "Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules", + "Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures", + "Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1", + "Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke", + "Flex_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel", + "Flex_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch", + "Flex_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III", + "Flex_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR", + "Flex_P1000_96_None_2_16_AnalysisError_TrashBinInStagingAreaCol3", + "Flex_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict", + "Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4", + "Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment", + "Flex_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x", + "Flex_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right", + "Flex_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol", + "Flex_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2", ] diff --git a/app-testing/automation/data/protocols.py b/app-testing/automation/data/protocols.py index 9e3894ff190..102b0faf683 100644 --- a/app-testing/automation/data/protocols.py +++ b/app-testing/automation/data/protocols.py @@ -285,117 +285,117 @@ class Protocols: robot_error=False, ) - OT3_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria: Protocol = Protocol( - file_name="OT3_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria", + OT2_P300M_P20S_TC_HS_TM_2_16_aspirateDispenseMix0Volume: Protocol = Protocol( + file_name="OT2_P300M_P20S_TC_HS_TM_2_16_aspirateDispenseMix0Volume", + file_extension="py", + protocol_name="OT2_P300M_P20S_TC_HS_TM_2_16_aspirateDispenseMix0Volume.py", + robot="OT-2", + app_error=False, + robot_error=False, + ) + + Flex_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria: Protocol = Protocol( + file_name="Flex_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria", file_extension="py", protocol_name="Quick Zymo Magbead RNA Extraction with Lysis: Bacteria 96 Channel Deletion Test", - robot="OT-3", + robot="Flex", app_error=False, robot_error=False, custom_labware=["opentrons_ot3_96_tiprack_1000ul_rss"], ) - - OT3_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel: Protocol = Protocol( - file_name="OT3_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel", + Flex_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel: Protocol = Protocol( + file_name="Flex_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel", file_extension="py", protocol_name="Omega HDQ DNA Extraction: Bacteria 96 FOR ABR TESTING", - robot="OT-3", + robot="Flex", app_error=False, robot_error=False, custom_labware=["opentrons_ot3_96_tiprack_1000ul_rss"], ) - - OT3_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch: Protocol = Protocol( - file_name="OT3_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch", + Flex_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch: Protocol = Protocol( + file_name="Flex_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch", file_extension="py", protocol_name="MagMax RNA Extraction: Cells 96 ABR TESTING", - robot="OT-3", + robot="Flex", app_error=False, robot_error=False, custom_labware=["opentrons_ot3_96_tiprack_200ul_rss"], ) - - OT3_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III: Protocol = Protocol( - file_name="OT3_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III", + Flex_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III: Protocol = Protocol( + file_name="Flex_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III", file_extension="py", protocol_name="Illumina DNA Prep 96x Head PART III", - robot="OT-3", + robot="Flex", app_error=False, robot_error=False, custom_labware=["opentrons_ot3_96_tiprack_200ul_rss", "opentrons_ot3_96_tiprack_50ul_rss"], ) - - OT3_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR: Protocol = Protocol( - file_name="OT3_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR", + Flex_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR: Protocol = Protocol( + file_name="Flex_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR", file_extension="py", protocol_name="IDT xGen EZ 96x Head PART I-III ABR", - robot="OT-3", + robot="Flex", app_error=False, robot_error=False, custom_labware=["opentrons_ot3_96_tiprack_50ul_rss", "opentrons_ot3_96_tiprack_200ul_rss"], ) - - OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4: Protocol = Protocol( - file_name="OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4", + Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4: Protocol = Protocol( + file_name="Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4", file_extension="py", protocol_name="Illumina DNA Enrichment v4", - robot="OT-3", + robot="Flex", app_error=False, robot_error=False, ) - - OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment: Protocol = Protocol( - file_name="OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment", + Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment: Protocol = Protocol( + file_name="Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment", file_extension="py", protocol_name="Illumina DNA Enrichment", - robot="OT-3", + robot="Flex", app_error=False, robot_error=False, ) - - OT3_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x: Protocol = Protocol( - file_name="OT3_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x", + Flex_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x: Protocol = Protocol( + file_name="Flex_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x", file_extension="py", protocol_name="Illumina DNA Prep 24x", - robot="OT-3", + robot="Flex", app_error=False, robot_error=False, ) - - OT3_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right: Protocol = Protocol( - file_name="OT3_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right", + Flex_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right: Protocol = Protocol( + file_name="Flex_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right", file_extension="py", - protocol_name="OT3 ABR Simple Normalize Long", - robot="OT-3", + protocol_name="Flex ABR Simple Normalize Long", + robot="Flex", app_error=False, robot_error=False, custom_labware=["opentrons_ot3_96_tiprack_200ul_rss"], ) - - OT3_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2: Protocol = Protocol( - file_name="OT3_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2", + Flex_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2: Protocol = Protocol( + file_name="Flex_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2", file_extension="py", - protocol_name="OT3 ABR KAPA Library Quant v2", - robot="OT-3", + protocol_name="Flex ABR KAPA Library Quant v2", + robot="Flex", app_error=False, robot_error=False, ) - OT3_None_None_2_16_AnalysisError_TrashBinInCol2: Protocol = Protocol( - file_name="OT3_None_None_2_16_AnalysisError_TrashBinInCol2", + Flex_None_None_2_16_AnalysisError_TrashBinInCol2: Protocol = Protocol( + file_name="Flex_None_None_2_16_AnalysisError_TrashBinInCol2", file_extension="py", protocol_name="QA Protocol - Analysis Error - Trash Bin in Column 2", - robot="OT-3", + robot="Flex", app_error=True, robot_error=False, app_analysis_error="InvalidTrashBinLocationError [line 15]: Invalid location for trash bin: C2. Valid slots: Any slot in column 1 or 3.", # noqa: E501 ) - OT3_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3: Protocol = Protocol( - file_name="OT3_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3", + Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3: Protocol = Protocol( + file_name="Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3", file_extension="py", protocol_name="QA Protocol - Analysis Error - Trash Bin in Staging Area Column 3", - robot="OT-3", + robot="Flex", app_error=True, robot_error=False, app_analysis_error="ProtocolCommandFailedError [line 21]: Error 4000 GENERAL_ERROR (ProtocolCommandFailedError): IncompatibleAddressableAreaError: Cannot use Trash Bin in C3, not compatible with one or more of the following fixtures: Slot C4", # noqa: E501 @@ -403,31 +403,31 @@ class Protocols: expected_test_reason="Analysis does not throw error when modules or fixtures are in staging area column 3.", # noqa: E501 ) - OT3_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4: Protocol = Protocol( - file_name="OT3_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4", + Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4: Protocol = Protocol( + file_name="Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4", file_extension="py", protocol_name="QA Protocol - Analysis Error - Trash Bin in Staging Area Column 4", - robot="OT-3", + robot="Flex", app_error=True, robot_error=False, app_analysis_error="ValueError [line 15]: Staging areas not permitted for trash bin.", # noqa: E501 ) - OT3_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash: Protocol = Protocol( - file_name="OT3_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash", + Flex_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash: Protocol = Protocol( + file_name="Flex_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash", file_extension="py", protocol_name="QA Protocol - Analysis Error - Drop Tips with no Trash", - robot="OT-3", + robot="Flex", app_error=True, robot_error=False, app_analysis_error="NoTrashDefinedError [line 24]: Error 4000 GENERAL_ERROR (NoTrashDefinedError): No trash container has been defined in this protocol.", # noqa: E501 ) - OT3_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3: Protocol = Protocol( - file_name="OT3_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3", + Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3: Protocol = Protocol( + file_name="Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3", file_extension="py", protocol_name="QA Protocol - Analysis Error - Module in Staging Area Column 3", - robot="OT-3", + robot="Flex", app_error=True, robot_error=False, app_analysis_error="InvalidModuleError [line 19]: Error 4000 GENERAL_ERROR (InvalidModuleError): Cannot use temperature module in C3, not compatible with one or more of the following fixtures: Slot C4", # noqa: E501 @@ -435,117 +435,117 @@ class Protocols: expected_test_reason="Analysis does not throw error when modules or fixtures are in staging area column 3.", # noqa: E501 ) - OT3_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4: Protocol = Protocol( - file_name="OT3_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4", + Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4: Protocol = Protocol( + file_name="Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4", file_extension="py", protocol_name="QA Protocol - Analysis Error - Module in Staging Area Column 4", - robot="OT-3", + robot="Flex", app_error=True, robot_error=False, app_analysis_error="ValueError [line 15]: Cannot load a module onto a staging slot.", # noqa: E501 ) - OT3_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict: Protocol = Protocol( - file_name="OT3_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict", + Flex_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict: Protocol = Protocol( + file_name="Flex_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict", file_extension="py", protocol_name="QA Protocol - Analysis Error - Module and Waste Chute Conflict", - robot="OT-3", + robot="Flex", app_error=True, robot_error=False, app_analysis_error="ProtocolCommandFailedError [line 25]: Error 4000 GENERAL_ERROR (ProtocolCommandFailedError): IncompatibleAddressableAreaError: Cannot use Waste Chute, not compatible with one or more of the following fixtures: Slot D3", # noqa: E501 ) - OT3_None_None_2_16_AnalysisError_AccessToFixedTrashProp: Protocol = Protocol( - file_name="OT3_None_None_2_16_AnalysisError_AccessToFixedTrashProp", + Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp: Protocol = Protocol( + file_name="Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp", file_extension="py", protocol_name="QA Protocol - Analysis Error - Access to Fixed Trash Property", - robot="OT-3", + robot="Flex", app_error=True, robot_error=False, app_analysis_error="APIVersionError [line 15]: Fixed Trash is not supported on Flex protocols in API Version 2.16 and above.", # noqa: E501 ) - OT3_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin: Protocol = Protocol( - file_name="OT3_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin", + Flex_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin: Protocol = Protocol( + file_name="Flex_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin", file_extension="py", protocol_name="QA Protocol - Analysis Error - Drop Labware in Trash Bin", - robot="OT-3", + robot="Flex", app_error=True, robot_error=False, app_analysis_error="ProtocolCommandFailedError [line 20]: Error 4000 GENERAL_ERROR (ProtocolCommandFailedError): IncompatibleAddressableAreaError: Cannot use Slot C3, not compatible with one or more of the following fixtures: Trash Bin in C3", # noqa: E501 ) - OT3_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol: Protocol = Protocol( - file_name="OT3_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol", + Flex_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol: Protocol = Protocol( + file_name="Flex_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol", file_extension="py", protocol_name="QA Protocol - Analysis Error - OT-2 Pipette in Flex Protocol", - robot="OT-3", + robot="Flex", app_error=True, robot_error=False, app_analysis_error="ProtocolCommandFailedError [line 22]: Error 4000 GENERAL_ERROR (ProtocolCommandFailedError): InvalidSpecificationForRobotTypeError: Cannot load a Gen2 pipette on a Flex.", # noqa: E501 ) - OT3_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol: Protocol = Protocol( - file_name="OT3_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol", + Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol: Protocol = Protocol( + file_name="Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol", file_extension="py", protocol_name="QA Protocol - Analysis Error - Magnetic Module in Flex Protocol", - robot="OT-3", + robot="Flex", app_error=True, robot_error=False, app_analysis_error="ValueError [line 15]: A magneticModuleType cannot be loaded into slot C1", # noqa: E501 ) - OT3_None_None_TM_2_16_AnalysisError_ModuleInCol2: Protocol = Protocol( - file_name="OT3_None_None_TM_2_16_AnalysisError_ModuleInCol2", + Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2: Protocol = Protocol( + file_name="Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2", file_extension="py", protocol_name="QA Protocol - Analysis Error - Module in Column 2", - robot="OT-3", + robot="Flex", app_error=True, robot_error=False, app_analysis_error="ValueError [line 15]: A temperatureModuleType cannot be loaded into slot C2", # noqa: E501 ) - OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures: Protocol = Protocol( - file_name="OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures", + Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures: Protocol = Protocol( + file_name="Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures", file_extension="py", protocol_name="QA Protocol - Deck Configuration 1 - No Fixtures", - robot="OT-3", + robot="Flex", app_error=False, robot_error=False, ) - OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules: Protocol = Protocol( - file_name="OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules", + Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules: Protocol = Protocol( + file_name="Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules", file_extension="py", protocol_name="QA Protocol - Deck Configuration 1 - No Modules", - robot="OT-3", + robot="Flex", app_error=False, robot_error=False, ) - OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures: Protocol = Protocol( - file_name="OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures", + Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures: Protocol = Protocol( + file_name="Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures", file_extension="py", protocol_name="QA Protocol - Deck Configuration 1 - No Modules or Fixtures", - robot="OT-3", + robot="Flex", app_error=False, robot_error=False, ) - OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1: Protocol = Protocol( - file_name="OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1", + Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1: Protocol = Protocol( + file_name="Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1", file_extension="py", protocol_name="QA Protocol - Deck Configuration 1", - robot="OT-3", + robot="Flex", app_error=False, robot_error=False, ) - OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke: Protocol = Protocol( - file_name="OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke", + Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke: Protocol = Protocol( + file_name="Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke", file_extension="py", protocol_name="QA Protocol - MEGAAA PROTOCOL - LETS BREAK, I MEAN TEST, EVERYTHING!!!!!", - robot="OT-3", + robot="Flex", app_error=False, robot_error=False, ) diff --git a/app-testing/automation/driver/base.py b/app-testing/automation/driver/base.py index 2a5c2398233..7ff6e5f39af 100644 --- a/app-testing/automation/driver/base.py +++ b/app-testing/automation/driver/base.py @@ -57,16 +57,17 @@ def apply_border_to_locator( def apply_style(argument: str) -> None: """Execute the javascript to apply the style.""" - self.driver.execute_script( - "arguments[0].setAttribute('style', arguments[1]);", finder(), argument - ) # type: ignore + self.driver.execute_script("arguments[0].setAttribute('style', arguments[1]);", finder(), argument) # type: ignore original_style = finder().get_attribute("style") apply_style(f"border: {border_size_px}px solid {color};") if screenshot: self.take_screenshot(message=screenshot_message) time.sleep(effect_time_sec) - apply_style(original_style) + if original_style is None: + apply_style("") + else: + apply_style(original_style) def apply_border_to_element( self, @@ -81,16 +82,17 @@ def apply_border_to_element( def apply_style(argument: str) -> None: """Execute the javascript to apply the style.""" - self.driver.execute_script( - "arguments[0].setAttribute('style', arguments[1]);", element, argument - ) # type: ignore + self.driver.execute_script("arguments[0].setAttribute('style', arguments[1]);", element, argument) # type: ignore original_style = element.get_attribute("style") apply_style(f"border: {border_size_px}px solid {color};") if screenshot: self.take_screenshot(message=screenshot_message) time.sleep(effect_time_sec) - apply_style(original_style) + if original_style is None: + apply_style("") + else: + apply_style(original_style) def highlight_element(self, finder: Callable[..., WebElement]) -> None: """Highlight an element.""" @@ -118,9 +120,7 @@ def take_screenshot(self, message: str = "") -> None: os.makedirs(directory_for_results) note = "" if (message == "") else f"_{message}".replace(" ", "_") file_name = ( - f"{str(time.time_ns())[:-3]}_{self.execution_id}".replace("/", "_").replace("::", "__").replace(".py", "") - + note - + ".png" + f"{str(time.time_ns())[:-3]}_{self.execution_id}".replace("/", "_").replace("::", "__").replace(".py", "") + note + ".png" ) screenshot_full_path: str = str(Path(directory_for_results, file_name)) self.console.print(f"screenshot saved: {file_name}", style="white on blue") @@ -188,9 +188,7 @@ def create_finder( ) def finder() -> Any: - return WebDriverWait(self.driver, timeout_sec, ignored_exceptions=ignored_exceptions).until( - expected_condition(element.locator) - ) + return WebDriverWait(self.driver, timeout_sec, ignored_exceptions=ignored_exceptions).until(expected_condition(element.locator)) return finder diff --git a/app-testing/automation/pages/app_settings.py b/app-testing/automation/pages/app_settings.py index b7eb0289cfc..d5480a1678d 100644 --- a/app-testing/automation/pages/app_settings.py +++ b/app-testing/automation/pages/app_settings.py @@ -471,8 +471,8 @@ def click_enable_developer_tools_toggle(self) -> None: tests. The click works but has no effect. """ button = self.get_enable_developer_tools_toggle() - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(button).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(button).perform() self.base.click(self.enable_developer_tools_toggle) # Elements for Feature Flag diff --git a/app-testing/automation/pages/device_landing.py b/app-testing/automation/pages/device_landing.py index 425ec0d3916..b2d32885fbf 100644 --- a/app-testing/automation/pages/device_landing.py +++ b/app-testing/automation/pages/device_landing.py @@ -164,7 +164,10 @@ def get_lights_status(self) -> bool: if not button: # None check but the finder throws so should never be hit return False # get the status of the toggle - return button.get_attribute("aria-checked").lower() == "true" + aria: str | None = button.get_attribute("aria-checked") + if not aria: # None check but the finder throws so *should* never be hit + return False + return aria.lower() == "true" def set_lights(self, on: bool) -> bool: """Set the lights toggle. Return a bool of the condition: final light state == the desired state.""" @@ -540,8 +543,8 @@ def is_deck_calibrated(self) -> bool: def get_pipette_calibration_overflow_1(self) -> WebElement: """Get the first pipette three dot menu button.""" scroll: WebElement = self.base.clickable_wrapper(self.pipette_calibration_overflow_1, 3) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(scroll).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(scroll).perform() return scroll def click_pipette_calibration_overflow_1(self) -> None: @@ -556,8 +559,8 @@ def click_pipette_calibration_overflow_1(self) -> None: def get_pipette_calibration_overflow_2(self) -> WebElement: """Get the first pipette three dot menu button.""" scroll: WebElement = self.base.clickable_wrapper(self.pipette_calibration_overflow_2, 3) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(scroll).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(scroll).perform() return scroll def click_pipette_calibration_overflow_2(self) -> None: @@ -573,8 +576,8 @@ def click_pipette_calibration_overflow_2(self) -> None: def click_pipette_offset_calibrate_button(self) -> None: """Click the calibrate button.""" scroll: WebElement = self.base.clickable_wrapper(self.calibrate_pipette_offset_button, 3) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(scroll).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(scroll).perform() self.base.click(self.calibrate_pipette_offset_button) # pipette calibration @@ -665,9 +668,9 @@ def click_continue_to_pipette_offset(self) -> None: def shift_down_arrow_key(self) -> None: """Send the keystroke shift + down arrow key.""" - actions = ActionChains(self.base.driver) # type: ignore - actions.send_keys(Keys.LEFT_SHIFT + Keys.ARROW_DOWN) # type: ignore - actions.perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.send_keys(Keys.LEFT_SHIFT + Keys.ARROW_DOWN) + actions.perform() save_calibration_move_to_slot_1: Element = Element( (By.XPATH, '//button[text()="save calibration and move to slot 1"]'), @@ -683,9 +686,9 @@ def click_save_calibration_move_to_slot_1(self) -> None: def up_arrow_key(self) -> None: """Send the keystroke arrow up key.""" - actions = ActionChains(self.base.driver) # type: ignore - actions.send_keys(Keys.ARROW_UP) # type: ignore - actions.perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.send_keys(Keys.ARROW_UP) + actions.perform() save_calibration: Element = Element( (By.XPATH, '//button[text()="save calibration"]'), diff --git a/app-testing/automation/pages/labware_position_check.py b/app-testing/automation/pages/labware_position_check.py index fdbbd12a0d7..1db45492a38 100644 --- a/app-testing/automation/pages/labware_position_check.py +++ b/app-testing/automation/pages/labware_position_check.py @@ -388,8 +388,8 @@ def __init__(self, driver: WebDriver, console: Console, execution_id: str) -> No def get_labware_position_check_button(self) -> WebElement: """Button to locate LPC button.""" button = self.base.clickable_wrapper(self.labware_setup_position_check_button, 2) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(button).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(button).perform() return button def get_labware_success_toast(self) -> WebElement: @@ -423,8 +423,8 @@ def get_labware_position_check_complete(self) -> WebElement: def click_labware_position_button(self) -> None: """Click labware position button.""" button = self.base.clickable_wrapper(self.labware_setup_position_check_button, 2) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(button).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(button).perform() self.base.click(self.labware_setup_position_check_button) def get_introScreen_labware_position_check_overview(self) -> WebElement: @@ -506,8 +506,8 @@ def click_down_jog_button(self) -> None: def get_confirm_position_button_pickup_tip(self) -> WebElement: """Locator for confirm position button pickup.""" toggle: WebElement = self.base.clickable_wrapper(self.confirm_position_button_pickup_tip, 5) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(toggle).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(toggle).perform() return toggle def click_confirm_position_button_pickup_tip(self) -> None: @@ -518,8 +518,8 @@ def click_confirm_position_button_pickup_tip(self) -> None: def get_confirm_position_moveto_slot_2(self) -> WebElement: """Locator for confirm position moveto slot.""" toggle: WebElement = self.base.clickable_wrapper(self.confirm_position_moveto_slot_2, 5) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(toggle).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(toggle).perform() return toggle def click_confirm_position_moveto_slot_2(self) -> None: @@ -530,8 +530,8 @@ def click_confirm_position_moveto_slot_2(self) -> None: def get_confirm_position_moveto_slot_5(self) -> WebElement: """Locator for confirm position move to slot.""" toggle: WebElement = self.base.clickable_wrapper(self.confirm_position_moveto_slot_5, 5) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(toggle).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(toggle).perform() return toggle def click_confirm_position_moveto_slot_5(self) -> None: @@ -542,8 +542,8 @@ def click_confirm_position_moveto_slot_5(self) -> None: def get_confirm_position_moveto_slot_6(self) -> WebElement: """Locator for confirm position moveto slot.""" toggle: WebElement = self.base.clickable_wrapper(self.confirm_position_moveto_slot_6, 5) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(toggle).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(toggle).perform() return toggle def click_confirm_position_moveto_slot_6(self) -> None: diff --git a/app-testing/automation/pages/labware_setup.py b/app-testing/automation/pages/labware_setup.py index e0dae8f9918..514a8916716 100644 --- a/app-testing/automation/pages/labware_setup.py +++ b/app-testing/automation/pages/labware_setup.py @@ -133,29 +133,29 @@ def get_thermocycler_module_modal_text(self) -> WebElement: def get_close_button(self) -> WebElement: """Locator for close button.""" toggle: WebElement = self.base.clickable_wrapper(LabwareSetup.close_button) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(toggle).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(toggle).perform() return toggle def click_close_button(self) -> None: """Click close button.""" toggle: WebElement = self.base.clickable_wrapper(LabwareSetup.close_button) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(toggle).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(toggle).perform() self.base.click(LabwareSetup.close_button) def get_proceed_to_run_button(self) -> WebElement: """Locator for proceed to run button.""" scroll: WebElement = self.base.clickable_wrapper(LabwareSetup.proceed_to_run_button) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(scroll).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(scroll).perform() return scroll def click_proceed_to_run_button(self) -> None: """Click proceed to run.""" scroll: WebElement = self.base.clickable_wrapper(LabwareSetup.proceed_to_run_button) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(scroll).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(scroll).perform() self.base.click(LabwareSetup.proceed_to_run_button) def get_start_run_button(self) -> WebElement: diff --git a/app-testing/automation/pages/module_setup.py b/app-testing/automation/pages/module_setup.py index 2afd0ad6ae6..20b024b807f 100644 --- a/app-testing/automation/pages/module_setup.py +++ b/app-testing/automation/pages/module_setup.py @@ -69,29 +69,29 @@ def get_temperature_module(self) -> WebElement: def get_module_setup_text_locator(self) -> WebElement: """Locator for module setup text.""" toggle: WebElement = self.base.clickable_wrapper(ModuleSetup.module_setup_text_locator) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(toggle).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(toggle).perform() return toggle def get_magnetic_module(self) -> WebElement: """Locator for magnetic module on deckmap.""" toggle: WebElement = self.base.clickable_wrapper(ModuleSetup.magnetic_module) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(toggle).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(toggle).perform() return toggle def get_proceed_to_labware_setup(self) -> WebElement: """Locator for proceed to labware setup.""" toggle: WebElement = self.base.clickable_wrapper(ModuleSetup.proceed_to_labware_setup) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(toggle).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(toggle).perform() return toggle def click_proceed_to_labware_setup(self) -> None: """Proceed to labware setup.""" toggle: WebElement = self.base.clickable_wrapper(ModuleSetup.proceed_to_labware_setup) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(toggle).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(toggle).perform() self.base.click(ModuleSetup.proceed_to_labware_setup) def click_proceed_to_module_setup(self) -> None: @@ -101,6 +101,6 @@ def click_proceed_to_module_setup(self) -> None: def click_module_setup_text(self) -> None: """Click module setup text.""" toggle: WebElement = self.base.clickable_wrapper(ModuleSetup.module_setup_text_locator) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(toggle).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(toggle).perform() self.base.click(ModuleSetup.module_setup_text_locator) diff --git a/app-testing/automation/pages/setup_calibration.py b/app-testing/automation/pages/setup_calibration.py index 7006ab18242..ea9589f027f 100644 --- a/app-testing/automation/pages/setup_calibration.py +++ b/app-testing/automation/pages/setup_calibration.py @@ -90,9 +90,7 @@ def __init__(self, driver: WebDriver, console: Console, execution_id: str) -> No "close robot calibration button", ) - proceed_to_module_setup_cta: Element = Element( - (By.ID, "RobotCalStep_proceedButton"), "proceed to module setup button" - ) + proceed_to_module_setup_cta: Element = Element((By.ID, "RobotCalStep_proceedButton"), "proceed to module setup button") def get_setup_for_run(self) -> WebElement: """Search for the setup for run text.""" @@ -129,8 +127,8 @@ def get_robot_calibration_help_modal_text(self) -> WebElement: def get_robot_calibration_close_button(self) -> WebElement: """Robot claibration close button.""" close: WebElement = self.base.clickable_wrapper(SetupCalibration.close_robot_calibration_button) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(close).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(close).perform() return close def click_robot_calibration_help_link(self) -> None: @@ -140,8 +138,8 @@ def click_robot_calibration_help_link(self) -> None: def click_robot_calibration_close_button(self) -> None: """Click robot calibration close.""" close: WebElement = self.base.clickable_wrapper(SetupCalibration.close_robot_calibration_button) - actions = ActionChains(self.base.driver) # type: ignore - actions.move_to_element(close).perform() # type: ignore + actions = ActionChains(self.base.driver) + actions.move_to_element(close).perform() self.base.click(SetupCalibration.close_robot_calibration_button) def get_required_tip_length_calibration(self) -> WebElement: diff --git a/app-testing/ci-tools/ot2_with_all_modules.yaml b/app-testing/ci-tools/ot2_with_all_modules.yaml deleted file mode 100644 index d9c1957446c..00000000000 --- a/app-testing/ci-tools/ot2_with_all_modules.yaml +++ /dev/null @@ -1,65 +0,0 @@ -###################### -# System Description # -###################### - -# This system builds an OT2 and 1 of each module. - - # - name: Substitute current sha into yaml - # id: sub-step - # uses: Opentrons/opentrons-emulation@release-v2.3.1 - # with: - # command: yaml-sub - # substitutions: >- - # [ - # ["otie", "source-location", "${{ github.sha }}"], - # ["t00-hot-to-handle", "source-location", "${{ github.sha }}"], - # ["fatal-attraction", "source-location", "${{ github.sha }}"], - # ["temperamental", "source-location", "${{ github.sha }}"], - # ["maggy", "source-location", "${{ github.sha }}"], - # ] - # input-file: ${{ github.workspace }}/ot3-firmware/emulation_setups/ci/ot3_only.yaml - # output-file-location: ${{ github.workspace }}/output.yaml - -system-unique-id: ot2-with-all-modules -robot: - id: otie - hardware: ot2 - source-type: remote - source-location: latest - emulation-level: firmware - robot-server-source-type: remote - robot-server-source-location: latest - exposed-port: 31950 - hardware-specific-attributes: - left-pipette: - model: p300_multi_v2.1 - id: p300multi - right-pipette: - model: p20_single_v2.2 - id: p20single -modules: - - id: shakey-and-warm - hardware: heater-shaker-module - source-type: remote - source-location: latest - emulation_level: firmware - - id: t00-hot-to-handle - hardware: thermocycler-module - source-type: remote - source-location: latest - emulation_level: firmware - - id: fatal-attraction - hardware: magnetic-module - source-type: remote - source-location: latest - emulation_level: firmware - - id: temperamental - hardware: temperature-module - source-type: remote - source-location: latest - emulation_level: firmware - - id: maggy - hardware: magnetic-module - source-type: remote - source-location: latest - emulation_level: firmware diff --git a/app-testing/citools/Dockerfile b/app-testing/citools/Dockerfile new file mode 100644 index 00000000000..05b2ed538ff --- /dev/null +++ b/app-testing/citools/Dockerfile @@ -0,0 +1,26 @@ +# Use 3.10 just like the app does +FROM python:3.10-slim-bullseye + +# Update packages and install git +RUN apt-get update && \ + apt-get upgrade -y && \ + apt-get install -y git libsystemd-dev + +# Define a build argument for the commit/tag/hash to clone +ARG OPENTRONS_VERSION=edge + +# Set the working directory in the container +WORKDIR /opentrons + +# Clone the Opentrons repository at the specified commit or tag +RUN git clone --branch $OPENTRONS_VERSION --depth 1 https://github.com/Opentrons/opentrons . + +# Install packages from local directories +RUN python -m pip install -U ./shared-data/python +RUN python -m pip install -U ./hardware[flex] +RUN python -m pip install -U ./api +RUN python -m pip install -U pandas==1.4.3 + +# The default command to run when starting the container +CMD ["tail", "-f", "/dev/null"] + diff --git a/app-testing/citools/__init__.py b/app-testing/citools/__init__.py new file mode 100644 index 00000000000..e11ed81c96c --- /dev/null +++ b/app-testing/citools/__init__.py @@ -0,0 +1 @@ +"""Package for all automation tools.""" diff --git a/app-testing/citools/generate_analyses.py b/app-testing/citools/generate_analyses.py new file mode 100644 index 00000000000..c8bccc9af45 --- /dev/null +++ b/app-testing/citools/generate_analyses.py @@ -0,0 +1,268 @@ +# docker build --build-arg OPENTRONS_VERSION=v7.0.2 -t opentrons-analysis:v7.0.2 . +# docker build --build-arg OPENTRONS_VERSION=v7.1.0-alpha.1 -t opentrons-analysis:v7.1.0-alpha.1 . +# docker build --build-arg OPENTRONS_VERSION=v7.1.0-alpha.2 -t opentrons-analysis:v7.1.0-alpha.2 . +# docker build --build-arg OPENTRONS_VERSION=v7.1.0-alpha.3 -t opentrons-analysis:v7.1.0-alpha.3 . + +# python -m pipenv run python citools/generate_analyses.py + +import json +import os +import time +from dataclasses import dataclass +from enum import Enum, auto +from pathlib import Path +from typing import Any, Dict, List + +import docker # type: ignore +from automation.data.protocol import Protocol +from rich import print +from rich.console import Console +from rich.panel import Panel +from rich.traceback import install + +install(show_locals=True) +IMAGE = "opentrons-analysis" +CONTAINER_LABWARE = "/var/lib/ot" +HOST_LABWARE = Path(Path(__file__).parent.parent, "files", "labware") +HOST_PROTOCOLS_ROOT = Path(Path(__file__).parent.parent, "files", "protocols") +CONTAINER_PROTOCOLS_ROOT = "/var/lib/ot/protocols" +CONTAINER_RESULTS = "/var/lib/ot/analysis_results" +HOST_RESULTS = Path(Path(__file__).parent.parent, "analysis_results") +ANALYSIS_SUFFIX = "analysis.json" + +console = Console() + + +class ProtocolType(Enum): + PROTOCOL_DESIGNER = auto() + PYTHON = auto() + + +@dataclass +class AnalyzeProtocol: + host_protocol_file: Path + container_protocol_file: Path + host_analysis_file: Path + container_analysis_file: Path + tag: str + analysis_execution_time: float | None = None + exit_code: int | None = None + output: str | None = None + analysis: Dict[str, Any] | None = None + + @property + def analysis_file_exists(self) -> bool: + return self.host_analysis_file.exists() + + def set_analysis(self) -> None: + if self.analysis_file_exists: + with open(self.host_analysis_file, "r") as file: + self.analysis = json.load(file) + + @property + def protocol_file_name(self) -> str: + return self.host_protocol_file.name + + @property + def protocol_type(self) -> str: + return (ProtocolType.PYTHON if self.host_protocol_file.suffix == ".py" else ProtocolType.PROTOCOL_DESIGNER).name.title() + + def set_analysis_execution_time(self, analysis_execution_time: float) -> None: + self.analysis_execution_time = analysis_execution_time + + +def run_container(image_name: str, timeout: int = 60) -> docker.models.containers.Container: + client = docker.from_env() + volumes = { + str(HOST_LABWARE): {"bind": CONTAINER_LABWARE, "mode": "rw"}, + str(HOST_RESULTS): {"bind": CONTAINER_RESULTS, "mode": "rw"}, + str(HOST_PROTOCOLS_ROOT): {"bind": CONTAINER_PROTOCOLS_ROOT, "mode": "rw"}, + } + + # Check for running containers using the specified image + containers = client.containers.list(filters={"ancestor": image_name, "status": "running"}) + + if containers: + print("Container already running.") + print("Exiting, stop this container so that you may be sure to have the right volumes attached.") + exit(1) + else: + # If no running container is found, start a new one with the specified volume + print("Starting a new container.") + container = client.containers.run(image_name, detach=True, volumes=volumes) + + # Wait for the container to be ready if a readiness command is provided + start_time = time.time() + while time.time() - start_time < timeout: + exit_code, output = container.exec_run(f"ls -al {CONTAINER_LABWARE}") + if exit_code == 0: + print("Container is ready.") + break + else: + print("Waiting for container to be ready...") + time.sleep(5) + else: + print("Timeout waiting for container to be ready. Proceeding anyway.") + return container + + +def stop_and_remove_containers(image_name: str) -> None: + client = docker.from_env() + + # Find all containers created from the specified image + containers = client.containers.list(all=True, filters={"ancestor": image_name}) + + for container in containers: + try: + # Stop the container if it's running + if container.status == "running": + print(f"Stopping container {container.short_id}...") + container.stop() + + # Remove the container + print(f"Removing container {container.short_id}...") + container.remove() + except docker.errors.ContainerError as e: + print(f"Error stopping/removing container {container.short_id}: {e}") + + +def has_designer_application(json_file_path: Path) -> bool: + try: + with open(json_file_path, "r", encoding="utf-8") as file: + data = json.load(file) + return "designerApplication" in data + except json.JSONDecodeError: + # Handle the exception if the file is not a valid JSON + print(f"Invalid JSON file: {json_file_path}") + return False + + +def host_analysis_path(protocol_file: Path, tag: str) -> Path: + return Path(HOST_RESULTS, f"{protocol_file.stem}_{tag}_{ANALYSIS_SUFFIX}") + + +def container_analysis_path(protocol_file: Path, tag: str) -> Path: + return Path(CONTAINER_RESULTS, f"{protocol_file.stem}_{tag}_{ANALYSIS_SUFFIX}") + + +def generate_protocols(tag: str) -> List[AnalyzeProtocol]: + def find_pd_protocols() -> List[AnalyzeProtocol]: + # Check if the provided path is a valid directory + if not HOST_PROTOCOLS_ROOT.is_dir(): + raise NotADirectoryError(f"The path {HOST_PROTOCOLS_ROOT} is not a valid directory.") + + # Recursively find all .json files + json_files = list(HOST_PROTOCOLS_ROOT.rglob("*.json")) + filtered_json_files = [file for file in json_files if has_designer_application(file)] + pd_protocols: List[AnalyzeProtocol] = [] + for path in filtered_json_files: + relative_path = path.relative_to(HOST_PROTOCOLS_ROOT) + updated_path = Path(CONTAINER_PROTOCOLS_ROOT, relative_path) + pd_protocols.append(AnalyzeProtocol(path, updated_path, host_analysis_path(path, tag), container_analysis_path(path, tag), tag)) + return pd_protocols + + def find_python_protocols() -> List[AnalyzeProtocol]: + # Check if the provided path is a valid directory + if not HOST_PROTOCOLS_ROOT.is_dir(): + raise NotADirectoryError(f"The path {HOST_PROTOCOLS_ROOT} is not a valid directory.") + + # Recursively find all .py files + python_files = list(HOST_PROTOCOLS_ROOT.rglob("*.py")) + py_protocols: List[AnalyzeProtocol] = [] + + for path in python_files: + relative_path = path.relative_to(HOST_PROTOCOLS_ROOT) + container_path = Path(CONTAINER_PROTOCOLS_ROOT, relative_path) + py_protocols.append( + AnalyzeProtocol(path, container_path, host_analysis_path(path, tag), container_analysis_path(path, tag), tag=tag) + ) + return py_protocols + + return find_pd_protocols() + find_python_protocols() + + +def remove_all_files_in_directory(directory: Path) -> None: + for filename in os.listdir(directory): + file_path = os.path.join(directory, filename) + try: + if os.path.isfile(file_path) or os.path.islink(file_path): + os.unlink(file_path) + elif os.path.isdir(file_path): + pass # Currently, subdirectories are not removed + except Exception as e: + print(f"Failed to delete {file_path}. Reason: {e}") + + +def report(protocol: AnalyzeProtocol) -> None: + panel = Panel( + f"[bold green]Output:[/bold green]\n{protocol.output}\n\n[bold red]Exit Code:[/bold red] {protocol.exit_code}", + title="[bold magenta]Command Result[/bold magenta]", + expand=False, + ) + console.print(panel) + if protocol.analysis_file_exists is True: + if protocol.analysis is not None and protocol.analysis["errors"] != []: + console.print(f"[bold red]Analysis has errors {protocol.protocol_file_name}[/bold red]") + console.print(protocol.analysis["errors"]) + console.print(protocol.output) + else: + console.print(f"[bold red]Analysis not created for {protocol.protocol_file_name}[/bold red]") + console.print(protocol.output) + + +def container_custom_labware_paths() -> List[str]: + if HOST_LABWARE.is_dir(): + return [os.path.join(CONTAINER_LABWARE, file) for file in os.listdir(HOST_LABWARE) if file.endswith(".json")] + return [] + + +def analyze(protocol: AnalyzeProtocol, container: docker.models.containers.Container) -> None: + # Run the analyze command + command = f"python -I -m opentrons.cli analyze --json-output {protocol.container_analysis_file} {protocol.container_protocol_file} {' '.join(map(str, container_custom_labware_paths()))}" # noqa: E501 + start_time = time.time() + exit_code, result = container.exec_run(command) # Assuming container is a defined object + protocol.output = result.decode("utf-8") + protocol.exit_code = exit_code + protocol.set_analysis() + protocol.set_analysis_execution_time(time.time() - start_time) + + +def analyze_many(protocol_files: List[AnalyzeProtocol], container: docker.models.containers.Container) -> None: + for file in protocol_files: + analyze(file, container) + accumulated_time = sum(protocol.analysis_execution_time for protocol in protocol_files if protocol.analysis_execution_time is not None) + console.print(f"{len(protocol_files)} protocols with total analysis time of {accumulated_time:.2f} seconds.\n") + + +def analyze_against_image(tag: str) -> List[AnalyzeProtocol]: + image_name = f"{IMAGE}:{tag}" + protocols = generate_protocols(tag) + protocols_to_process = protocols + # protocols_to_process = protocols[:1] # For testing + try: + console.print(f"Analyzing {len(protocols_to_process)} protocol(s) against {image_name}...") + container = run_container(image_name) + analyze_many(protocols_to_process, container) + finally: + stop_and_remove_containers(image_name) + return protocols_to_process + + +def generate_analyses_from_test(tag: str, protocols: List[Protocol]) -> None: + """Generate analyses from the tests.""" + image_name = f"{IMAGE}:{tag}" + protocols_to_process: List[AnalyzeProtocol] = [] + for protocol in protocols: + host_protocol_file = Path(protocol.file_path) + container_protocol_file = Path(CONTAINER_PROTOCOLS_ROOT, host_protocol_file.relative_to(HOST_PROTOCOLS_ROOT)) + host_analysis_file = host_analysis_path(host_protocol_file, tag) + container_analysis_file = container_analysis_path(host_protocol_file, tag) + protocols_to_process.append( + AnalyzeProtocol(host_protocol_file, container_protocol_file, host_analysis_file, container_analysis_file, tag) + ) + try: + console.print(f"Analyzing {len(protocols_to_process)} protocol(s) against {tag}...") + container = run_container(image_name) + analyze_many(protocols_to_process, container) + finally: + stop_and_remove_containers(image_name) diff --git a/app-testing/ci-tools/linux_get_chromedriver.sh b/app-testing/citools/linux_get_chromedriver.sh similarity index 100% rename from app-testing/ci-tools/linux_get_chromedriver.sh rename to app-testing/citools/linux_get_chromedriver.sh diff --git a/app-testing/ci-tools/mac_get_chromedriver.sh b/app-testing/citools/mac_get_chromedriver.sh similarity index 100% rename from app-testing/ci-tools/mac_get_chromedriver.sh rename to app-testing/citools/mac_get_chromedriver.sh diff --git a/app-testing/ci-tools/windows_get_chromedriver.ps1 b/app-testing/citools/windows_get_chromedriver.ps1 similarity index 100% rename from app-testing/ci-tools/windows_get_chromedriver.ps1 rename to app-testing/citools/windows_get_chromedriver.ps1 diff --git a/app-testing/conftest.py b/app-testing/conftest.py index afc55ea719e..1c2762fffd4 100644 --- a/app-testing/conftest.py +++ b/app-testing/conftest.py @@ -20,9 +20,14 @@ traceback.install(console=_console) -# Check to see if we have a dotenv file and use it +# My setting overrides to false we give preference to System Environment Variables +# This is important for CI if find_dotenv(): - load_dotenv(find_dotenv()) + load_dotenv(find_dotenv(), override=False) +elif find_dotenv(filename="example.env"): # example.env has our defaults + load_dotenv(find_dotenv(filename="example.env"), override=False) +else: + raise AssertionError("No .env or example.env file found.") def pytest_collection_modifyitems(items): # type: ignore # noqa: ANN201,ANN001 diff --git a/app-testing/example.env b/app-testing/example.env index d5a97f48962..a359f3d6770 100644 --- a/app-testing/example.env +++ b/app-testing/example.env @@ -11,46 +11,42 @@ SLOWMO=TrUe HIGHLIGHT_SECONDS=.3 # default is 2 UPDATE_CHANNEL="beta" # latest beta alpha LOCALHOST=false +# Analyses Snapshot test target +TARGET=edge # run all tests # possible values in \automation\data\protocol_files.py # dynamically generate with make print-protocols -# OT-2 Protocols -# APP_ANALYSIS_TEST_PROTOCOLS="OT2_P1000SLeft_None_6_1_SimpleTransfer, -# OT2_P20SRight_None_6_1_SimpleTransferError, -# OT2_P20S_P300M_HS_6_1_HS_WithCollision_Error, -# OT2_P20S_P300M_NoMods_6_1_TransferReTransferLiquid, -# OT2_P300M_P20S_HS_6_1_Smoke620release, -# OT2_P300M_P20S_MM_HS_TD_TC_6_1_AllMods_Error, -# OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40, -# OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40Error, -# OT2_P300M_P20S_NoMod_6_1_MixTransferManyLiquids, -# OT2_P300M_P300S_HS_6_1_HS_NormalUseWithTransfer, -# OT2_P300SG1_None_5_2_6_Gen1PipetteSimple, -# OT2_P300SLeft_MM_TM_TM_5_2_6_MOAMTemps, -# OT2_None_None_2_12_Python310SyntaxRobotAnalysisOnlyError, -# OT2_None_None_2_13_PythonSyntaxError, -# OT2_P10S_P300M_TC1_TM_MM_2_11_Swift, -# OT2_P20S_None_2_7_Walkthrough, -# OT2_P300MLeft_MM_TM_2_4_Zymo, -# OT2_P300M_P20S_None_2_12_FailOnRun, -# OT2_P300M_P20S_TC_MM_TM_6_13_Smoke620Release, -# OT2_P300SLeft_MM1_MM_2_2_EngageMagHeightFromBase, -# OT2_P300SLeft_MM1_MM_TM_2_3_Mix, -# OT2_P300S_Thermocycler_Moam_Error, -# OT2_P300S_Twinning_Error" -# Flex Protocols -APP_ANALYSIS_TEST_PROTOCOLS="OT3_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch, -OT3_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right, -OT3_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2, -OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4, -OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment, -OT3_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x, -OT3_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel, -OT3_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR, -OT3_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III, -OT3_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria" +APP_ANALYSIS_TEST_PROTOCOLS="Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp, Flex_None_None_2_16_AnalysisError_TrashBinInCol2, +Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3, Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4, +Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol, Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2, +Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3, Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4, +Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment, +Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4, +Flex_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x, +Flex_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right, Flex_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash, +Flex_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin, Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1, +Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures, +Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules, +Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures, Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke, +Flex_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel, Flex_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch, +Flex_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III, +Flex_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR, +Flex_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict, Flex_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria, +Flex_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol, Flex_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2, +OT2_None_None_2_12_Python310SyntaxRobotAnalysisOnlyError, OT2_None_None_2_13_PythonSyntaxError, +OT2_P1000SLeft_None_6_1_SimpleTransfer, OT2_P10S_P300M_TC1_TM_MM_2_11_Swift, OT2_P20SRight_None_6_1_SimpleTransferError, +OT2_P20S_None_2_7_Walkthrough, OT2_P20S_P300M_HS_6_1_HS_WithCollision_Error, OT2_P20S_P300M_NoMods_6_1_TransferReTransferLiquid, +OT2_P300MLeft_MM_TM_2_4_Zymo, OT2_P300M_P20S_2_16_aspirateDispenseMix0Volume, OT2_P300M_P20S_HS_6_1_Smoke620release, +OT2_P300M_P20S_MM_HS_TD_TC_6_1_AllMods_Error, OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40, OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40Error, +OT2_P300M_P20S_NoMod_6_1_MixTransferManyLiquids, OT2_P300M_P20S_None_2_12_FailOnRun, OT2_P300M_P20S_TC_HS_TM_2_13_SmokeTestV3, +OT2_P300M_P20S_TC_HS_TM_2_14_SmokeTestV3, OT2_P300M_P20S_TC_HS_TM_2_15_SmokeTestV3, OT2_P300M_P20S_TC_HS_TM_2_16_SmokeTestV3, +OT2_P300M_P20S_TC_HS_TM_2_16_aspirateDispenseMix0Volume, OT2_P300M_P20S_TC_MM_TM_2_13_Smoke620Release, +OT2_P300M_P300S_HS_6_1_HS_NormalUseWithTransfer, OT2_P300SG1_None_5_2_6_Gen1PipetteSimple, +OT2_P300SLeft_MM1_MM_2_2_EngageMagHeightFromBase, OT2_P300SLeft_MM1_MM_TM_2_3_Mix, OT2_P300SLeft_MM_TM_TM_5_2_6_MOAMTemps, +OT2_P300S_Thermocycler_Moam_Error, OT2_P300S_Twinning_Error" # run one -# APP_ANALYSIS_TEST_PROTOCOLS="OT2_P1000SLeft_None_6_1_SimpleTransfer" -FILES_FOLDER="files" \ No newline at end of file +# APP_ANALYSIS_TEST_PROTOCOLS="Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment" + +FILES_FOLDER="files" diff --git a/app-testing/files/protocols/py/OT3_None_None_2_16_AnalysisError_AccessToFixedTrashProp.py b/app-testing/files/protocols/py/Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp.py similarity index 100% rename from app-testing/files/protocols/py/OT3_None_None_2_16_AnalysisError_AccessToFixedTrashProp.py rename to app-testing/files/protocols/py/Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp.py diff --git a/app-testing/files/protocols/py/OT3_None_None_2_16_AnalysisError_TrashBinInCol2.py b/app-testing/files/protocols/py/Flex_None_None_2_16_AnalysisError_TrashBinInCol2.py similarity index 100% rename from app-testing/files/protocols/py/OT3_None_None_2_16_AnalysisError_TrashBinInCol2.py rename to app-testing/files/protocols/py/Flex_None_None_2_16_AnalysisError_TrashBinInCol2.py diff --git a/app-testing/files/protocols/py/OT3_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3.py b/app-testing/files/protocols/py/Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3.py similarity index 100% rename from app-testing/files/protocols/py/OT3_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3.py rename to app-testing/files/protocols/py/Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3.py diff --git a/app-testing/files/protocols/py/OT3_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4.py b/app-testing/files/protocols/py/Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4.py similarity index 100% rename from app-testing/files/protocols/py/OT3_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4.py rename to app-testing/files/protocols/py/Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4.py diff --git a/app-testing/files/protocols/py/OT3_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol.py b/app-testing/files/protocols/py/Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol.py similarity index 100% rename from app-testing/files/protocols/py/OT3_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol.py rename to app-testing/files/protocols/py/Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol.py diff --git a/app-testing/files/protocols/py/OT3_None_None_TM_2_16_AnalysisError_ModuleInCol2.py b/app-testing/files/protocols/py/Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2.py similarity index 100% rename from app-testing/files/protocols/py/OT3_None_None_TM_2_16_AnalysisError_ModuleInCol2.py rename to app-testing/files/protocols/py/Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2.py diff --git a/app-testing/files/protocols/py/OT3_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3.py b/app-testing/files/protocols/py/Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3.py similarity index 100% rename from app-testing/files/protocols/py/OT3_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3.py rename to app-testing/files/protocols/py/Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3.py diff --git a/app-testing/files/protocols/py/OT3_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4.py b/app-testing/files/protocols/py/Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4.py similarity index 100% rename from app-testing/files/protocols/py/OT3_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4.py rename to app-testing/files/protocols/py/Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4.py diff --git a/app-testing/files/protocols/py/OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment.py b/app-testing/files/protocols/py/Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment.py similarity index 99% rename from app-testing/files/protocols/py/OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment.py rename to app-testing/files/protocols/py/Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment.py index beb6101bdee..e4b55c71752 100644 --- a/app-testing/files/protocols/py/OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment.py +++ b/app-testing/files/protocols/py/Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment.py @@ -340,7 +340,6 @@ def grip_offset(action, item, slot=None): protocol.comment("--> Repeating 3 washes") washreps = 3 for wash in range(washreps): - protocol.comment("--> Adding EEW") EEWVol = 200 p1000.pick_up_tip() diff --git a/app-testing/files/protocols/py/OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4.py b/app-testing/files/protocols/py/Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4.py similarity index 99% rename from app-testing/files/protocols/py/OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4.py rename to app-testing/files/protocols/py/Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4.py index 591a891ead3..92b7018f773 100644 --- a/app-testing/files/protocols/py/OT3_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4.py +++ b/app-testing/files/protocols/py/Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment_v4.py @@ -49,16 +49,13 @@ def run(protocol: protocol_api.ProtocolContext): - global p200_tips global p50_tips if ABR_TEST == True: protocol.comment("THIS IS A ABR RUN WITH " + str(RUN) + " REPEATS") protocol.comment("THIS IS A DRY RUN") if DRYRUN == True else protocol.comment("THIS IS A REACTION RUN") - protocol.comment("USED TIPS WILL GO IN TRASH") if TIP_TRASH == True else protocol.comment( - "USED TIPS WILL BE RE-RACKED" - ) + protocol.comment("USED TIPS WILL GO IN TRASH") if TIP_TRASH == True else protocol.comment("USED TIPS WILL BE RE-RACKED") # DECK SETUP AND LABWARE # ========== FIRST ROW =========== @@ -104,9 +101,7 @@ def run(protocol: protocol_api.ProtocolContext): EPM = reagent_plate.wells_by_name()["A7"] # pipette - p1000 = protocol.load_instrument( - "flex_8channel_1000", "left", tip_racks=[tiprack_200_1, tiprack_200_2, tiprack_200_3] - ) + p1000 = protocol.load_instrument("flex_8channel_1000", "left", tip_racks=[tiprack_200_1, tiprack_200_2, tiprack_200_3]) p50 = protocol.load_instrument("flex_8channel_50", "right", tip_racks=[tiprack_50_1, tiprack_50_2]) # tip and sample tracking @@ -443,7 +438,6 @@ def grip_offset(action, item, slot=None): washreps = 3 washcount = 0 for wash in range(washreps): - protocol.comment("--> Adding EEW") EEWVol = 200 for loop, X in enumerate(column_2_list): @@ -1007,7 +1001,6 @@ def grip_offset(action, item, slot=None): # Resetting TWB for X in range(COLUMNS): - p1000.aspirate(200, Liquid_trash_well_2.bottom(z=1)) p1000.dispense(200, EEW_1.bottom(z=1)) p1000.aspirate(200, Liquid_trash_well_2.bottom(z=1)) diff --git a/app-testing/files/protocols/py/OT3_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x.py b/app-testing/files/protocols/py/Flex_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x.py similarity index 100% rename from app-testing/files/protocols/py/OT3_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x.py rename to app-testing/files/protocols/py/Flex_P1000MLeft_P50MRight_HS_TM_MM_TC_2_15_ABR4_Illumina_DNA_Prep_24x.py diff --git a/app-testing/files/protocols/py/OT3_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right.py b/app-testing/files/protocols/py/Flex_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right.py similarity index 94% rename from app-testing/files/protocols/py/OT3_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right.py rename to app-testing/files/protocols/py/Flex_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right.py index 6cd167bb6c0..3b8ebfa3b15 100644 --- a/app-testing/files/protocols/py/OT3_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right.py +++ b/app-testing/files/protocols/py/Flex_P1000SRight_None_2_15_ABR_Simple_Normalize_Long_Right.py @@ -22,7 +22,6 @@ def run(protocol: protocol_api.ProtocolContext): - if DRYRUN == "YES": protocol.comment("THIS IS A DRY RUN") else: @@ -173,9 +172,7 @@ def run(protocol: protocol_api.ProtocolContext): CurrentWell = str(data[current][1]) DyeVol = float(data[current][2]) if DyeVol != 0: - p1000.transfer( - DyeVol, Dye_1.bottom(z=2), sample_plate_1.wells_by_name()[CurrentWell].top(z=1), new_tip="never" - ) + p1000.transfer(DyeVol, Dye_1.bottom(z=2), sample_plate_1.wells_by_name()[CurrentWell].top(z=1), new_tip="never") current += 1 p1000.return_tip() @@ -204,9 +201,7 @@ def run(protocol: protocol_api.ProtocolContext): CurrentWell = str(data[current][1]) DyeVol = float(data[current][2]) if DyeVol != 0: - p1000.transfer( - DyeVol, Dye_2.bottom(z=2), sample_plate_2.wells_by_name()[CurrentWell].top(z=1), new_tip="never" - ) + p1000.transfer(DyeVol, Dye_2.bottom(z=2), sample_plate_2.wells_by_name()[CurrentWell].top(z=1), new_tip="never") current += 1 p1000.return_tip() @@ -235,9 +230,7 @@ def run(protocol: protocol_api.ProtocolContext): CurrentWell = str(data[current][1]) DyeVol = float(data[current][2]) if DyeVol != 0: - p1000.transfer( - DyeVol, Dye_3.bottom(z=2), sample_plate_3.wells_by_name()[CurrentWell].top(z=1), new_tip="never" - ) + p1000.transfer(DyeVol, Dye_3.bottom(z=2), sample_plate_3.wells_by_name()[CurrentWell].top(z=1), new_tip="never") current += 1 p1000.return_tip() diff --git a/app-testing/files/protocols/py/OT3_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash.py b/app-testing/files/protocols/py/Flex_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash.py similarity index 99% rename from app-testing/files/protocols/py/OT3_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash.py rename to app-testing/files/protocols/py/Flex_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash.py index b05ceee8976..7b43ce3be2a 100644 --- a/app-testing/files/protocols/py/OT3_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash.py +++ b/app-testing/files/protocols/py/Flex_P1000_96_2_16_AnalysisError_DropTipsWithNoTrash.py @@ -12,7 +12,6 @@ def run(ctx: protocol_api.ProtocolContext) -> None: - ################ ### FIXTURES ### ################ diff --git a/app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin.py b/app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin.py similarity index 100% rename from app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin.py rename to app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_2_16_AnalysisError_DropLabwareIntoTrashBin.py diff --git a/app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1.py b/app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1.py similarity index 84% rename from app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1.py rename to app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1.py index 529f23becb6..e76c8179098 100644 --- a/app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1.py +++ b/app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1.py @@ -29,7 +29,6 @@ def default_well(tiprack: protocol_api.labware) -> protocol_api.labware.Well: def run(ctx: protocol_api.ProtocolContext) -> None: - ################ ### FIXTURES ### ################ @@ -60,14 +59,10 @@ def run(ctx: protocol_api.ProtocolContext) -> None: src_pcr_plate = ctx.load_labware(PCR_PLATE_96_NAME, "B2") dest_pcr_plate = ctx.load_labware(PCR_PLATE_96_NAME, "C2") - on_deck_tip_rack_1 = ctx.load_labware( - TIPRACK_96_NAME, TIP_RACK_LOCATION_1, adapter="opentrons_flex_96_tiprack_adapter" - ) + on_deck_tip_rack_1 = ctx.load_labware(TIPRACK_96_NAME, TIP_RACK_LOCATION_1, adapter="opentrons_flex_96_tiprack_adapter") tip_rack_adapter_1 = on_deck_tip_rack_1.parent - on_deck_tip_rack_2 = ctx.load_labware( - TIPRACK_96_NAME, TIP_RACK_LOCATION_2, adapter="opentrons_flex_96_tiprack_adapter" - ) + on_deck_tip_rack_2 = ctx.load_labware(TIPRACK_96_NAME, TIP_RACK_LOCATION_2, adapter="opentrons_flex_96_tiprack_adapter") tip_rack_adapter_2 = on_deck_tip_rack_2.parent off_deck_tip_rack_1 = ctx.load_labware(TIPRACK_96_NAME, protocol_api.OFF_DECK) @@ -110,15 +105,11 @@ def run(ctx: protocol_api.ProtocolContext) -> None: ######################## pipette_96_channel.pick_up_tip(default_well(on_deck_tip_rack_1)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.drop_tip(waste_chute) pipette_96_channel.pick_up_tip(default_well(on_deck_tip_rack_2)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.drop_tip(trash_bin_1) ################################## @@ -140,15 +131,11 @@ def run(ctx: protocol_api.ProtocolContext) -> None: ############################# pipette_96_channel.pick_up_tip(default_well(staging_area_tip_rack_1)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.drop_tip(waste_chute) pipette_96_channel.pick_up_tip(default_well(staging_area_tip_rack_2)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.drop_tip(trash_bin_2) ################################## @@ -166,15 +153,11 @@ def run(ctx: protocol_api.ProtocolContext) -> None: ctx.move_labware(off_deck_tip_rack_2, tip_rack_adapter_2, use_gripper=not USING_GRIPPER) pipette_96_channel.pick_up_tip(default_well(off_deck_tip_rack_1)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.drop_tip(waste_chute) pipette_96_channel.pick_up_tip(default_well(off_deck_tip_rack_2)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.drop_tip(waste_chute) ############################ diff --git a/app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures.py b/app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures.py similarity index 84% rename from app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures.py rename to app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures.py index 80450b34cd7..b29e6457338 100644 --- a/app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures.py +++ b/app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures.py @@ -28,7 +28,6 @@ def default_well(tiprack: protocol_api.labware) -> protocol_api.labware.Well: def run(ctx: protocol_api.ProtocolContext) -> None: - ############### ### MODULES ### ############### @@ -51,14 +50,10 @@ def run(ctx: protocol_api.ProtocolContext) -> None: src_pcr_plate = ctx.load_labware(PCR_PLATE_96_NAME, "B2") dest_pcr_plate = ctx.load_labware(PCR_PLATE_96_NAME, "C2") - on_deck_tip_rack_1 = ctx.load_labware( - TIPRACK_96_NAME, TIP_RACK_LOCATION_1, adapter="opentrons_flex_96_tiprack_adapter" - ) + on_deck_tip_rack_1 = ctx.load_labware(TIPRACK_96_NAME, TIP_RACK_LOCATION_1, adapter="opentrons_flex_96_tiprack_adapter") tip_rack_adapter_1 = on_deck_tip_rack_1.parent - on_deck_tip_rack_2 = ctx.load_labware( - TIPRACK_96_NAME, TIP_RACK_LOCATION_2, adapter="opentrons_flex_96_tiprack_adapter" - ) + on_deck_tip_rack_2 = ctx.load_labware(TIPRACK_96_NAME, TIP_RACK_LOCATION_2, adapter="opentrons_flex_96_tiprack_adapter") tip_rack_adapter_2 = on_deck_tip_rack_2.parent off_deck_tip_rack_1 = ctx.load_labware(TIPRACK_96_NAME, protocol_api.OFF_DECK) off_deck_tip_rack_2 = ctx.load_labware(TIPRACK_96_NAME, protocol_api.OFF_DECK) @@ -90,15 +85,11 @@ def run(ctx: protocol_api.ProtocolContext) -> None: ######################## pipette_96_channel.pick_up_tip(default_well(on_deck_tip_rack_1)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.return_tip() pipette_96_channel.pick_up_tip(default_well(on_deck_tip_rack_2)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.return_tip() ##################################### @@ -116,15 +107,11 @@ def run(ctx: protocol_api.ProtocolContext) -> None: ctx.move_labware(off_deck_tip_rack_2, tip_rack_adapter_2, use_gripper=not USING_GRIPPER) pipette_96_channel.pick_up_tip(default_well(off_deck_tip_rack_1)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.return_tip() pipette_96_channel.pick_up_tip(default_well(off_deck_tip_rack_2)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.return_tip() ############################ diff --git a/app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules.py b/app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules.py similarity index 81% rename from app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules.py rename to app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules.py index 6b751f1d0e9..680ad37966b 100644 --- a/app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules.py +++ b/app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModules.py @@ -28,7 +28,6 @@ def default_well(tiprack: protocol_api.labware) -> protocol_api.labware.Well: def run(ctx: protocol_api.ProtocolContext) -> None: - ################ ### FIXTURES ### ################ @@ -44,14 +43,10 @@ def run(ctx: protocol_api.ProtocolContext) -> None: src_pcr_plate = ctx.load_labware(PCR_PLATE_96_NAME, "B2") dest_pcr_plate = ctx.load_labware(PCR_PLATE_96_NAME, "C2") - on_deck_tip_rack_1 = ctx.load_labware( - TIPRACK_96_NAME, TIP_RACK_LOCATION_1, adapter="opentrons_flex_96_tiprack_adapter" - ) + on_deck_tip_rack_1 = ctx.load_labware(TIPRACK_96_NAME, TIP_RACK_LOCATION_1, adapter="opentrons_flex_96_tiprack_adapter") tip_rack_adapter_1 = on_deck_tip_rack_1.parent - on_deck_tip_rack_2 = ctx.load_labware( - TIPRACK_96_NAME, TIP_RACK_LOCATION_2, adapter="opentrons_flex_96_tiprack_adapter" - ) + on_deck_tip_rack_2 = ctx.load_labware(TIPRACK_96_NAME, TIP_RACK_LOCATION_2, adapter="opentrons_flex_96_tiprack_adapter") tip_rack_adapter_2 = on_deck_tip_rack_2.parent off_deck_tip_rack_1 = ctx.load_labware(TIPRACK_96_NAME, protocol_api.OFF_DECK) off_deck_tip_rack_2 = ctx.load_labware(TIPRACK_96_NAME, protocol_api.OFF_DECK) @@ -93,15 +88,11 @@ def run(ctx: protocol_api.ProtocolContext) -> None: ######################## pipette_96_channel.pick_up_tip(default_well(on_deck_tip_rack_1)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.drop_tip(waste_chute) pipette_96_channel.pick_up_tip(default_well(on_deck_tip_rack_2)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.drop_tip(trash_bin_1) ################################## @@ -123,15 +114,11 @@ def run(ctx: protocol_api.ProtocolContext) -> None: ############################# pipette_96_channel.pick_up_tip(default_well(staging_area_tip_rack_1)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.drop_tip(waste_chute) pipette_96_channel.pick_up_tip(default_well(staging_area_tip_rack_2)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.drop_tip(trash_bin_2) ################################## @@ -149,15 +136,11 @@ def run(ctx: protocol_api.ProtocolContext) -> None: ctx.move_labware(off_deck_tip_rack_2, tip_rack_adapter_2, use_gripper=not USING_GRIPPER) pipette_96_channel.pick_up_tip(default_well(off_deck_tip_rack_1)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.drop_tip(waste_chute) pipette_96_channel.pick_up_tip(default_well(off_deck_tip_rack_2)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.drop_tip(waste_chute) ########################################## diff --git a/app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures.py b/app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures.py similarity index 81% rename from app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures.py rename to app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures.py index b809f034447..165d532d5a4 100644 --- a/app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures.py +++ b/app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoModulesNoFixtures.py @@ -28,7 +28,6 @@ def default_well(tiprack: protocol_api.labware) -> protocol_api.labware.Well: def run(ctx: protocol_api.ProtocolContext) -> None: - ############### ### LABWARE ### ############### @@ -36,14 +35,10 @@ def run(ctx: protocol_api.ProtocolContext) -> None: src_pcr_plate = ctx.load_labware(PCR_PLATE_96_NAME, "B2") dest_pcr_plate = ctx.load_labware(PCR_PLATE_96_NAME, "C2") - on_deck_tip_rack_1 = ctx.load_labware( - TIPRACK_96_NAME, TIP_RACK_LOCATION_1, adapter="opentrons_flex_96_tiprack_adapter" - ) + on_deck_tip_rack_1 = ctx.load_labware(TIPRACK_96_NAME, TIP_RACK_LOCATION_1, adapter="opentrons_flex_96_tiprack_adapter") tip_rack_adapter_1 = on_deck_tip_rack_1.parent - on_deck_tip_rack_2 = ctx.load_labware( - TIPRACK_96_NAME, TIP_RACK_LOCATION_2, adapter="opentrons_flex_96_tiprack_adapter" - ) + on_deck_tip_rack_2 = ctx.load_labware(TIPRACK_96_NAME, TIP_RACK_LOCATION_2, adapter="opentrons_flex_96_tiprack_adapter") tip_rack_adapter_2 = on_deck_tip_rack_2.parent off_deck_tip_rack_1 = ctx.load_labware(TIPRACK_96_NAME, protocol_api.OFF_DECK) off_deck_tip_rack_2 = ctx.load_labware(TIPRACK_96_NAME, protocol_api.OFF_DECK) @@ -75,15 +70,11 @@ def run(ctx: protocol_api.ProtocolContext) -> None: ######################## pipette_96_channel.pick_up_tip(default_well(on_deck_tip_rack_1)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.return_tip() pipette_96_channel.pick_up_tip(default_well(on_deck_tip_rack_2)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.return_tip() ##################################### @@ -101,15 +92,11 @@ def run(ctx: protocol_api.ProtocolContext) -> None: ctx.move_labware(off_deck_tip_rack_2, tip_rack_adapter_2, use_gripper=not USING_GRIPPER) pipette_96_channel.pick_up_tip(default_well(off_deck_tip_rack_1)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.return_tip() pipette_96_channel.pick_up_tip(default_well(off_deck_tip_rack_2)) - pipette_96_channel.transfer( - TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never" - ) + pipette_96_channel.transfer(TRANSFER_VOL, default_well(src_pcr_plate), default_well(dest_pcr_plate), new_tip="never") pipette_96_channel.return_tip() ########################################## diff --git a/app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke.py b/app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke.py similarity index 99% rename from app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke.py rename to app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke.py index 932fba22f31..2caabd69fb2 100644 --- a/app-testing/files/protocols/py/OT3_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke.py +++ b/app-testing/files/protocols/py/Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_Smoke.py @@ -40,7 +40,6 @@ def run(ctx: protocol_api.ProtocolContext) -> None: - ################ ### FIXTURES ### ################ diff --git a/app-testing/files/protocols/py/OT3_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel.py b/app-testing/files/protocols/py/Flex_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel.py similarity index 99% rename from app-testing/files/protocols/py/OT3_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel.py rename to app-testing/files/protocols/py/Flex_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel.py index dfdcd4587be..1d36403234e 100644 --- a/app-testing/files/protocols/py/OT3_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel.py +++ b/app-testing/files/protocols/py/Flex_P1000_96_HS_TM_MM_2_15_ABR5_6_HDQ_Bacteria_ParkTips_96_channel.py @@ -430,9 +430,7 @@ def grip_offset(action, item, slot=None): drop_offset=grip_offset("drop", "mag-plate"), ) - ctx.delay( - minutes=settling_time, msg="Please wait " + str(settling_time) + " minute(s) for beads to pellet." - ) + ctx.delay(minutes=settling_time, msg="Please wait " + str(settling_time) + " minute(s) for beads to pellet.") # Remove Supernatant and move off magnet ctx.comment("------- Removing Supernatant -------") diff --git a/app-testing/files/protocols/py/OT3_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch.py b/app-testing/files/protocols/py/Flex_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch.py similarity index 97% rename from app-testing/files/protocols/py/OT3_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch.py rename to app-testing/files/protocols/py/Flex_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch.py index 0be6b796136..498aa01d627 100644 --- a/app-testing/files/protocols/py/OT3_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch.py +++ b/app-testing/files/protocols/py/Flex_P1000_96_HS_TM_MM_2_15_MagMaxRNACells96Ch.py @@ -292,9 +292,7 @@ def lysis(vol, source): pip.return_tip() h_s.set_and_wait_for_shake_speed(rpm=2200) - ctx.delay( - minutes=1 if not dry_run else 0.25, msg="Please wait 1 minute while the lysis buffer mixes with the sample." - ) + ctx.delay(minutes=1 if not dry_run else 0.25, msg="Please wait 1 minute while the lysis buffer mixes with the sample.") h_s.deactivate_shaker() def bind(): @@ -356,9 +354,7 @@ def bind(): ) # Incubate for beads to bind DNA - ctx.delay( - minutes=5 if not dry_run else 0.25, msg="Please wait 5 minutes while the sample binds with the beads." - ) + ctx.delay(minutes=5 if not dry_run else 0.25, msg="Please wait 5 minutes while the sample binds with the beads.") h_s.deactivate_shaker() # Transfer plate to magnet @@ -379,7 +375,6 @@ def bind(): remove_supernatant(175, lysis_res) def wash(vol, source, waste): - global whichwash # Defines which wash the protocol is on to log on the app """ if source == wash1: @@ -415,9 +410,7 @@ def wash(vol, source, waste): h_s.close_labware_latch() for washi in np.arange(settling_time, 0, -0.5): # settling time timer for washes - ctx.delay( - minutes=0.5, msg="There are " + str(washi) + " minutes left in wash " + str(whichwash) + " incubation." - ) + ctx.delay(minutes=0.5, msg="There are " + str(washi) + " minutes left in wash " + str(whichwash) + " incubation.") remove_supernatant(vol, lysis_res) @@ -441,7 +434,6 @@ def dnase(vol, source): pip.flow_rate.dispense = 150 def stop_reaction(vol, source): - pip.pick_up_tip(tips) pip.aspirate(vol, source) pip.dispense(vol, samples_m) diff --git a/app-testing/files/protocols/py/OT3_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III.py b/app-testing/files/protocols/py/Flex_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III.py similarity index 100% rename from app-testing/files/protocols/py/OT3_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III.py rename to app-testing/files/protocols/py/Flex_P1000_96_HS_TM_TC_MM_2_15_ABR5_6_Illumina_DNA_Prep_96x_Head_PART_III.py diff --git a/app-testing/files/protocols/py/OT3_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR.py b/app-testing/files/protocols/py/Flex_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR.py similarity index 99% rename from app-testing/files/protocols/py/OT3_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR.py rename to app-testing/files/protocols/py/Flex_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR.py index 3c572c62f24..09c9797d3be 100644 --- a/app-testing/files/protocols/py/OT3_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR.py +++ b/app-testing/files/protocols/py/Flex_P1000_96_None_2_15_ABR5_6_IDT_xGen_EZ_96x_Head_PART_I_III_ABR.py @@ -38,11 +38,8 @@ def run(protocol: protocol_api.ProtocolContext): - protocol.comment("THIS IS A DRY RUN") if DRYRUN == True else protocol.comment("THIS IS A REACTION RUN") - protocol.comment("USED TIPS WILL GO IN TRASH") if TIP_TRASH == True else protocol.comment( - "USED TIPS WILL BE RE-RACKED" - ) + protocol.comment("USED TIPS WILL GO IN TRASH") if TIP_TRASH == True else protocol.comment("USED TIPS WILL BE RE-RACKED") # DECK SETUP AND LABWARE # ========== FIRST ROW =========== diff --git a/app-testing/files/protocols/py/OT3_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict.py b/app-testing/files/protocols/py/Flex_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict.py similarity index 99% rename from app-testing/files/protocols/py/OT3_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict.py rename to app-testing/files/protocols/py/Flex_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict.py index 0c5fb7cd509..8868e4d49f9 100644 --- a/app-testing/files/protocols/py/OT3_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict.py +++ b/app-testing/files/protocols/py/Flex_P1000_96_TM_2_16_AnalysisError_ModuleAndWasteChuteConflict.py @@ -12,7 +12,6 @@ def run(ctx: protocol_api.ProtocolContext) -> None: - ctx.load_waste_chute() tip_rack = ctx.load_labware("opentrons_flex_96_tiprack_1000ul", "A1", adapter="opentrons_flex_96_tiprack_adapter") diff --git a/app-testing/files/protocols/py/OT3_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria.py b/app-testing/files/protocols/py/Flex_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria.py similarity index 96% rename from app-testing/files/protocols/py/OT3_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria.py rename to app-testing/files/protocols/py/Flex_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria.py index c3df5669932..9600944a1a6 100644 --- a/app-testing/files/protocols/py/OT3_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria.py +++ b/app-testing/files/protocols/py/Flex_P100_96_HS_TM_2_15_Quick_Zymo_RNA_Bacteria.py @@ -67,9 +67,7 @@ def run(ctx): elutionplate = tempdeck.load_labware("opentrons_96_pcr_adapter_armadillo_wellplate_200ul") # Load Reservoir Plates - wash2_reservoir = lysis_reservoir = ctx.load_labware( - deepwell_type, "2" - ) # deleted after use- replaced (by gripper) with wash2 res + wash2_reservoir = lysis_reservoir = ctx.load_labware(deepwell_type, "2") # deleted after use- replaced (by gripper) with wash2 res bind_reservoir = ctx.load_labware(deepwell_type, "6") wash1_reservoir = ctx.load_labware(deepwell_type, "5") wash3_reservoir = wash4_reservoir = wash5_reservoir = ctx.load_labware(deepwell_type, "7") @@ -331,9 +329,7 @@ def bind(vol, source): pip.return_tip() h_s.set_and_wait_for_shake_speed(rpm=1800) - ctx.delay( - minutes=20 if not dry_run else 0.25, msg="Please wait 20 minutes while the sample binds with the beads." - ) + ctx.delay(minutes=20 if not dry_run else 0.25, msg="Please wait 20 minutes while the sample binds with the beads.") h_s.deactivate_shaker() h_s.open_labware_latch() @@ -354,7 +350,6 @@ def bind(vol, source): remove_supernatant(vol + starting_vol, bind_res) def wash(vol, source): - global whichwash # Defines which wash the protocol is on to log on the app if source == wash1: @@ -395,9 +390,7 @@ def wash(vol, source): h_s.close_labware_latch() for washi in np.arange(settling_time, 0, -0.5): # settling time timer for washes - ctx.delay( - minutes=0.5, msg="There are " + str(washi) + " minutes left in wash " + str(whichwash) + " incubation." - ) + ctx.delay(minutes=0.5, msg="There are " + str(washi) + " minutes left in wash " + str(whichwash) + " incubation.") remove_supernatant(vol, waste_res) @@ -416,7 +409,6 @@ def dnase(vol, source): h_s.deactivate_shaker() def stop_reaction(vol, source): - pip.pick_up_tip(tips) pip.aspirate(vol, source) pip.dispense(vol, samples_m) @@ -459,9 +451,7 @@ def elute(vol, source): h_s.set_and_wait_for_shake_speed(rpm=2000) if not dry_run: tempdeck.set_temperature(4) - ctx.delay( - minutes=3 if not dry_run else 0.25, msg="Please wait 5 minutes while the sample elutes from the beads." - ) + ctx.delay(minutes=3 if not dry_run else 0.25, msg="Please wait 5 minutes while the sample elutes from the beads.") h_s.deactivate_shaker() h_s.open_labware_latch() diff --git a/app-testing/files/protocols/py/OT3_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol.py b/app-testing/files/protocols/py/Flex_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol.py similarity index 100% rename from app-testing/files/protocols/py/OT3_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol.py rename to app-testing/files/protocols/py/Flex_P300Gen2_None_2_16_AnalysisError_OT2PipetteInFlexProtocol.py diff --git a/app-testing/files/protocols/py/OT3_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2.py b/app-testing/files/protocols/py/Flex_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2.py similarity index 87% rename from app-testing/files/protocols/py/OT3_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2.py rename to app-testing/files/protocols/py/Flex_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2.py index f22de72e0b0..c08906b2297 100644 --- a/app-testing/files/protocols/py/OT3_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2.py +++ b/app-testing/files/protocols/py/Flex_P50MLeft_P1000MRight_None_2_15_ABRKAPALibraryQuantLongv2.py @@ -49,7 +49,6 @@ def right(s, amount): def run(protocol: protocol_api.ProtocolContext): - if DRYRUN == "YES": protocol.comment("THIS IS A DRY RUN") else: @@ -77,12 +76,8 @@ def run(protocol: protocol_api.ProtocolContext): "nest_96_wellplate_100ul_pcr_full_skirt", "10" ) # <--- Actually an Eppendorf 96 well, same dimensions if FORMAT == "384": - qpcrplate_1 = protocol.load_labware( - "corning_384_wellplate_112ul_flat", "9" - ) # <--- Actually an Eppendorf 96 well, same dimensions - qpcrplate_2 = protocol.load_labware( - "corning_384_wellplate_112ul_flat", "10" - ) # <--- Actually an Eppendorf 96 well, same dimensions + qpcrplate_1 = protocol.load_labware("corning_384_wellplate_112ul_flat", "9") # <--- Actually an Eppendorf 96 well, same dimensions + qpcrplate_2 = protocol.load_labware("corning_384_wellplate_112ul_flat", "10") # <--- Actually an Eppendorf 96 well, same dimensions # REAGENT PLATE STD_1 = reagent_plate["A1"] @@ -136,9 +131,7 @@ def run(protocol: protocol_api.ProtocolContext): protocol.comment("--> Dispensing Diluent Part 1 and Part 2") protocol.comment("==============================================") p1000.pick_up_tip() - if ( - samplecolumns >= 1 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 1: # ----------------------------------------------------------------------------------------- X = "A2" Y = "A6" p1000.move_to(DIL.bottom(z=p1000_offset_Res)) @@ -158,9 +151,7 @@ def run(protocol: protocol_api.ProtocolContext): p1000.default_speed = 400 p1000.move_to(DIL.top()) p1000.blow_out() - if ( - samplecolumns >= 2 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 2: # ----------------------------------------------------------------------------------------- X = "A3" Y = "A7" p1000.move_to(DIL.bottom(z=p1000_offset_Res)) @@ -180,9 +171,7 @@ def run(protocol: protocol_api.ProtocolContext): p1000.default_speed = 400 p1000.move_to(DIL.top()) p1000.blow_out() - if ( - samplecolumns >= 3 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 3: # ----------------------------------------------------------------------------------------- X = "A4" Y = "A8" p1000.move_to(DIL.bottom(z=p1000_offset_Res)) @@ -207,27 +196,21 @@ def run(protocol: protocol_api.ProtocolContext): protocol.comment("==============================================") protocol.comment("--> Adding Sample to Diluent Part 1") protocol.comment("==============================================") - if ( - samplecolumns >= 1 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 1: # ----------------------------------------------------------------------------------------- X = INICOLUMN1 Y = "A2" p50.pick_up_tip() p50.aspirate(2, source_plate[X].bottom(z=p50_offset_Mag), rate=0.25) p50.dispense(2, dilution_plate_1[Y].center(), rate=0.5) p50.drop_tip() if DRYRUN == "NO" else p50.return_tip() - if ( - samplecolumns >= 2 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 2: # ----------------------------------------------------------------------------------------- X = INICOLUMN2 Y = "A3" p50.pick_up_tip() p50.aspirate(2, source_plate[X].bottom(z=p50_offset_Mag), rate=0.25) p50.dispense(2, dilution_plate_1[Y].center(), rate=0.5) p50.drop_tip() if DRYRUN == "NO" else p50.return_tip() - if ( - samplecolumns >= 3 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 3: # ----------------------------------------------------------------------------------------- X = INICOLUMN3 Y = "A4" p50.pick_up_tip() @@ -236,9 +219,7 @@ def run(protocol: protocol_api.ProtocolContext): p50.drop_tip() if DRYRUN == "NO" else p50.return_tip() protocol.comment("--> Mixing") - if ( - samplecolumns >= 1 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 1: # ----------------------------------------------------------------------------------------- X = "A2" p1000.pick_up_tip() p1000.move_to(dilution_plate_1[X].bottom(z=p1000_offset_Temp)) @@ -248,9 +229,7 @@ def run(protocol: protocol_api.ProtocolContext): protocol.delay(seconds=2) p1000.default_speed = 400 p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() - if ( - samplecolumns >= 2 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 2: # ----------------------------------------------------------------------------------------- X = "A3" p1000.pick_up_tip() p1000.move_to(dilution_plate_1[X].bottom(z=p1000_offset_Temp)) @@ -261,9 +240,7 @@ def run(protocol: protocol_api.ProtocolContext): protocol.delay(seconds=2) p1000.default_speed = 400 p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() - if ( - samplecolumns >= 3 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 3: # ----------------------------------------------------------------------------------------- X = "A4" p1000.pick_up_tip() p1000.move_to(dilution_plate_1[X].bottom(z=p1000_offset_Temp)) @@ -277,27 +254,21 @@ def run(protocol: protocol_api.ProtocolContext): protocol.comment("==============================================") protocol.comment("--> Adding Diluted Sample to Diluent Part 2") protocol.comment("==============================================") - if ( - samplecolumns >= 1 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 1: # ----------------------------------------------------------------------------------------- X = "A2" Y = "A6" p50.pick_up_tip() p50.aspirate(5, dilution_plate_1[X].center(), rate=0.5) p50.dispense(5, dilution_plate_1[Y].center(), rate=0.5) p50.drop_tip() if DRYRUN == "NO" else p50.return_tip() - if ( - samplecolumns >= 2 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 2: # ----------------------------------------------------------------------------------------- X = "A3" Y = "A7" p50.pick_up_tip() p50.aspirate(5, dilution_plate_1[X].center(), rate=0.5) p50.dispense(5, dilution_plate_1[Y].center(), rate=0.5) p50.drop_tip() if DRYRUN == "NO" else p50.return_tip() - if ( - samplecolumns >= 3 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 3: # ----------------------------------------------------------------------------------------- X = "A4" Y = "A8" p50.pick_up_tip() @@ -306,9 +277,7 @@ def run(protocol: protocol_api.ProtocolContext): p50.drop_tip() if DRYRUN == "NO" else p50.return_tip() protocol.comment("--> Mixing") - if ( - samplecolumns >= 1 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 1: # ----------------------------------------------------------------------------------------- X = "A6" p1000.pick_up_tip() p1000.move_to(dilution_plate_1[X].bottom(z=p1000_offset_Temp)) @@ -318,9 +287,7 @@ def run(protocol: protocol_api.ProtocolContext): protocol.delay(seconds=2) p1000.default_speed = 400 p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() - if ( - samplecolumns >= 2 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 2: # ----------------------------------------------------------------------------------------- X = "A7" p1000.pick_up_tip() p1000.move_to(dilution_plate_1[X].bottom(z=p1000_offset_Temp)) @@ -330,9 +297,7 @@ def run(protocol: protocol_api.ProtocolContext): protocol.delay(seconds=2) p1000.default_speed = 400 p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() - if ( - samplecolumns >= 3 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 3: # ----------------------------------------------------------------------------------------- X = "A8" p1000.pick_up_tip() p1000.move_to(dilution_plate_1[X].bottom(z=p1000_offset_Temp)) @@ -352,21 +317,15 @@ def run(protocol: protocol_api.ProtocolContext): p1000.pick_up_tip() p1000.aspirate((qPCRVol), PCR_1.bottom(z=p1000_offset_Thermo), rate=0.25) p1000.dispense(qPCRVol, dilution_plate_1["A9"].bottom(z=p1000_offset_Temp), rate=0.25) - if ( - samplecolumns >= 1 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 1: # ----------------------------------------------------------------------------------------- X = "A10" p1000.aspirate((qPCRVol), PCR_1.bottom(z=p1000_offset_Thermo), rate=0.25) p1000.dispense(qPCRVol, dilution_plate_1[X].bottom(z=p1000_offset_Temp), rate=0.25) - if ( - samplecolumns >= 2 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 2: # ----------------------------------------------------------------------------------------- X = "A11" p1000.aspirate((qPCRVol), PCR_1.bottom(z=p1000_offset_Thermo), rate=0.25) p1000.dispense(qPCRVol, dilution_plate_1[X].bottom(z=p1000_offset_Temp), rate=0.25) - if ( - samplecolumns >= 3 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 3: # ----------------------------------------------------------------------------------------- X = "A12" p1000.aspirate((qPCRVol), PCR_1.bottom(z=p1000_offset_Thermo), rate=0.25) p1000.dispense(qPCRVol, dilution_plate_1[X].bottom(z=p1000_offset_Temp), rate=0.25) @@ -375,21 +334,15 @@ def run(protocol: protocol_api.ProtocolContext): p1000.pick_up_tip() p1000.aspirate((qPCRVol), PCR_2.bottom(z=p1000_offset_Thermo), rate=0.25) p1000.dispense(qPCRVol, dilution_plate_2["A9"].bottom(z=p1000_offset_Deck), rate=0.25) - if ( - samplecolumns >= 1 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 1: # ----------------------------------------------------------------------------------------- X = "A10" p1000.aspirate((qPCRVol), PCR_2.bottom(z=p1000_offset_Thermo), rate=0.25) p1000.dispense(qPCRVol, dilution_plate_2[X].bottom(z=p1000_offset_Deck), rate=0.25) - if ( - samplecolumns >= 2 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 2: # ----------------------------------------------------------------------------------------- X = "A11" p1000.aspirate((qPCRVol), PCR_2.bottom(z=p1000_offset_Thermo), rate=0.25) p1000.dispense(qPCRVol, dilution_plate_2[X].bottom(z=p1000_offset_Deck), rate=0.25) - if ( - samplecolumns >= 3 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 3: # ----------------------------------------------------------------------------------------- X = "A12" p1000.aspirate((qPCRVol), PCR_2.bottom(z=p1000_offset_Thermo), rate=0.25) p1000.dispense(qPCRVol, dilution_plate_2[X].bottom(z=p1000_offset_Deck), rate=0.25) @@ -420,9 +373,7 @@ def run(protocol: protocol_api.ProtocolContext): protocol.comment("==============================================") protocol.comment("--> Adding Diluted Sample to Mix") protocol.comment("==============================================") - if ( - samplecolumns >= 1 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 1: # ----------------------------------------------------------------------------------------- X = "A6" Y = "A10" p50.pick_up_tip() @@ -433,9 +384,7 @@ def run(protocol: protocol_api.ProtocolContext): protocol.delay(seconds=2) p50.default_speed = 400 p50.drop_tip() if DRYRUN == "NO" else p50.return_tip() - if ( - samplecolumns >= 2 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 2: # ----------------------------------------------------------------------------------------- X = "A7" Y = "A11" p50.pick_up_tip() @@ -446,9 +395,7 @@ def run(protocol: protocol_api.ProtocolContext): protocol.delay(seconds=2) p50.default_speed = 400 p50.drop_tip() if DRYRUN == "NO" else p50.return_tip() - if ( - samplecolumns >= 3 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 3: # ----------------------------------------------------------------------------------------- X = "A8" Y = "A12" p50.pick_up_tip() @@ -460,9 +407,7 @@ def run(protocol: protocol_api.ProtocolContext): p50.default_speed = 400 p50.drop_tip() if DRYRUN == "NO" else p50.return_tip() - if ( - samplecolumns >= 1 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 1: # ----------------------------------------------------------------------------------------- X = "A6" Y = "A10" p50.pick_up_tip() @@ -473,9 +418,7 @@ def run(protocol: protocol_api.ProtocolContext): protocol.delay(seconds=2) p50.default_speed = 400 p50.drop_tip() if DRYRUN == "NO" else p50.return_tip() - if ( - samplecolumns >= 2 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 2: # ----------------------------------------------------------------------------------------- X = "A7" Y = "A11" p50.pick_up_tip() @@ -486,9 +429,7 @@ def run(protocol: protocol_api.ProtocolContext): protocol.delay(seconds=2) p50.default_speed = 400 p50.drop_tip() if DRYRUN == "NO" else p50.return_tip() - if ( - samplecolumns >= 3 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 3: # ----------------------------------------------------------------------------------------- X = "A8" Y = "A12" p50.pick_up_tip() @@ -515,9 +456,7 @@ def run(protocol: protocol_api.ProtocolContext): p1000.dispense(20, qpcrplate_1[Y2].bottom(z=p1000_offset_Mag), rate=0.5) p1000.dispense(20, qpcrplate_1[Y3].bottom(z=p1000_offset_Mag), rate=0.5) p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() - if ( - samplecolumns >= 1 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 1: # ----------------------------------------------------------------------------------------- X = "A10" Y1 = "A4" Y2 = "A5" @@ -528,9 +467,7 @@ def run(protocol: protocol_api.ProtocolContext): p1000.dispense(20, qpcrplate_1[Y2].bottom(z=p1000_offset_Mag), rate=0.5) p1000.dispense(20, qpcrplate_1[Y3].bottom(z=p1000_offset_Mag), rate=0.5) p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() - if ( - samplecolumns >= 2 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 2: # ----------------------------------------------------------------------------------------- X = "A11" Y1 = "A7" Y2 = "A8" @@ -541,9 +478,7 @@ def run(protocol: protocol_api.ProtocolContext): p1000.dispense(20, qpcrplate_1[Y2].bottom(z=p1000_offset_Mag), rate=0.5) p1000.dispense(20, qpcrplate_1[Y3].bottom(z=p1000_offset_Mag), rate=0.5) p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() - if ( - samplecolumns >= 3 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 3: # ----------------------------------------------------------------------------------------- X = "A12" Y1 = "A10" Y2 = "A11" @@ -555,7 +490,6 @@ def run(protocol: protocol_api.ProtocolContext): p1000.dispense(20, qpcrplate_1[Y3].bottom(z=p1000_offset_Mag), rate=0.5) p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() if FORMAT == "384": - p1000.reset_tipracks() p50.reset_tipracks() @@ -613,9 +547,7 @@ def run(protocol: protocol_api.ProtocolContext): p1000.default_speed = 400 p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() - if ( - samplecolumns >= 1 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 1: # ----------------------------------------------------------------------------------------- X = "A10" Y1 = "B1" Y2 = "B2" @@ -668,9 +600,7 @@ def run(protocol: protocol_api.ProtocolContext): p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() - if ( - samplecolumns >= 2 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 2: # ----------------------------------------------------------------------------------------- X = "A11" Y1 = "A7" Y2 = "A8" @@ -723,9 +653,7 @@ def run(protocol: protocol_api.ProtocolContext): p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() - if ( - samplecolumns >= 3 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 3: # ----------------------------------------------------------------------------------------- X = "A12" Y1 = "B7" Y2 = "B8" @@ -829,9 +757,7 @@ def run(protocol: protocol_api.ProtocolContext): p1000.default_speed = 400 p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() - if ( - samplecolumns >= 1 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 1: # ----------------------------------------------------------------------------------------- X = "A10" Y1 = "B1" Y2 = "B2" @@ -884,9 +810,7 @@ def run(protocol: protocol_api.ProtocolContext): p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() - if ( - samplecolumns >= 2 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 2: # ----------------------------------------------------------------------------------------- X = "A11" Y1 = "A7" Y2 = "A8" @@ -939,9 +863,7 @@ def run(protocol: protocol_api.ProtocolContext): p1000.drop_tip() if DRYRUN == "NO" else p1000.return_tip() - if ( - samplecolumns >= 3 - ): # ----------------------------------------------------------------------------------------- + if samplecolumns >= 3: # ----------------------------------------------------------------------------------------- X = "A12" Y1 = "B7" Y2 = "B8" diff --git a/app-testing/files/protocols/py/OT2_P20S_None_2_7_Walkthrough.py b/app-testing/files/protocols/py/OT2_P20S_None_2_7_Walkthrough.py index 5ee3763af99..68718efe2e9 100644 --- a/app-testing/files/protocols/py/OT2_P20S_None_2_7_Walkthrough.py +++ b/app-testing/files/protocols/py/OT2_P20S_None_2_7_Walkthrough.py @@ -18,10 +18,7 @@ def get_values(*names): def run(ctx): - - [well_plate, pipette, tips, pipette_mount] = get_values( # noqa: F821 - "well_plate", "pipette", "tips", "pipette_mount" - ) + [well_plate, pipette, tips, pipette_mount] = get_values("well_plate", "pipette", "tips", "pipette_mount") # noqa: F821 # load labware plate = ctx.load_labware(well_plate, "1") diff --git a/app-testing/files/protocols/py/OT2_P300MLeft_MM_TM_2_4_Zymo.py b/app-testing/files/protocols/py/OT2_P300MLeft_MM_TM_2_4_Zymo.py index bce761ac09a..2ea6ae793d0 100644 --- a/app-testing/files/protocols/py/OT2_P300MLeft_MM_TM_2_4_Zymo.py +++ b/app-testing/files/protocols/py/OT2_P300MLeft_MM_TM_2_4_Zymo.py @@ -108,10 +108,7 @@ def run(ctx): res2 = ctx.load_labware(res_type, "3", "reagent reservoir 2") res1 = ctx.load_labware(res_type, "2", "reagent reservoir 1") num_cols = math.ceil(num_samples / 8) - tips300 = [ - ctx.load_labware("opentrons_96_tiprack_300ul", slot, "200µl filtertiprack") - for slot in ["5", "7", "8", "10", "11"] - ] + tips300 = [ctx.load_labware("opentrons_96_tiprack_300ul", slot, "200µl filtertiprack") for slot in ["5", "7", "8", "10", "11"]] if park_tips: parkingrack = ctx.load_labware("opentrons_96_tiprack_20ul", "4", "tiprack for parking") parking_spots = parkingrack.rows()[0][:num_cols] @@ -433,7 +430,6 @@ def wash(vol, source, mix_reps=15, park=True, resuspend=True): remove_supernatant(vol, park=park) def dnase(vol, source, mix_reps=6, park=True, resuspend=True): - if resuspend and magdeck.status == "engaged": magdeck.disengage() @@ -463,7 +459,6 @@ def dnase(vol, source, mix_reps=6, park=True, resuspend=True): ctx.pause("Incubating for 10 minutes for DNase 1 treatment with occasional mixing.") def stop_reaction(vol, source, mix_reps=6, park=True, resuspend=True): - if resuspend and magdeck.status == "engaged": magdeck.disengage() diff --git a/app-testing/files/protocols/py/OT2_P300S_Twinning_Error.py b/app-testing/files/protocols/py/OT2_P300S_Twinning_Error.py index 497313c66ad..a3f7a3414fa 100644 --- a/app-testing/files/protocols/py/OT2_P300S_Twinning_Error.py +++ b/app-testing/files/protocols/py/OT2_P300S_Twinning_Error.py @@ -8,7 +8,6 @@ def run(ctx): - tiprack = ctx.load_labware("opentrons_96_tiprack_300ul", 1) labware = ctx.load_labware("usascientific_12_reservoir_22ml", 2) other_labware = ctx.load_labware("corning_96_wellplate_360ul_flat", 3) diff --git a/app-testing/print_protocols.py b/app-testing/print_protocols.py index eb5bc7bc366..e064f44d883 100644 --- a/app-testing/print_protocols.py +++ b/app-testing/print_protocols.py @@ -6,16 +6,17 @@ from rich.panel import Panel stems = [p.stem for p in pathlib.Path(pathlib.Path.cwd(), "files", "protocols").rglob("*") if p.is_file()] +sorted_stems = sorted(stems) rich.print(Panel("For protocol_files.names")) -rich.print(stems) +rich.print(sorted_stems) rich.print(Panel("Formatted for .env")) -rich.print(", ".join(stems)) +rich.print(", ".join(sorted_stems)) rich.print(Panel("What are actually defined?")) protocols = Protocols() props = [prop for prop in dir(protocols) if "__" not in prop] rich.print(",\n".join(props)) -possible = set(stems) +possible = set(sorted_stems) actual = set(props) missing_protocols = possible - actual orphan_protocols = actual - possible diff --git a/app-testing/pyproject.toml b/app-testing/pyproject.toml index 74380c51b22..273fc00740d 100644 --- a/app-testing/pyproject.toml +++ b/app-testing/pyproject.toml @@ -1,10 +1,10 @@ [tool.black] -line-length = 120 -target-version = ['py311'] +line-length = 140 +target-version = ['py312'] [tool.ruff] -line-length = 120 -target-version = "py311" +line-length = 140 +target-version = "py312" exclude = ["files"] src = ["*.py", "automation", "tests"] select = [ @@ -28,6 +28,7 @@ disallow_any_generics = true check_untyped_defs = true no_implicit_reexport = true exclude = "__init__.py" +python_version = "3.12" [mypy-selenium] ignore_missing_imports = true diff --git a/app-testing/pytest.ini b/app-testing/pytest.ini index b43796a2150..5bdb3486d34 100644 --- a/app-testing/pytest.ini +++ b/app-testing/pytest.ini @@ -1,3 +1,4 @@ [pytest] +generate_report_on_test = True junit_family = legacy -addopts = -s --junitxml=results/results.xml --log-cli-level info --strict-markers +addopts = --junitxml=results/results.xml --log-cli-level info --html=results/report.html --self-contained-html diff --git a/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp][Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp].json b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp][Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp].json new file mode 100644 index 00000000000..a21a9ba6a78 --- /dev/null +++ b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp][Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp].json @@ -0,0 +1,73 @@ +{ + "commands": [ + { + "commandType": "home", + "params": {}, + "result": {}, + "status": "succeeded" + } + ], + "config": { + "apiVersion": [ + 2, + 16 + ], + "protocolType": "python" + }, + "errors": [ + { + "detail": "APIVersionError [line 15]: Fixed Trash is not supported on Flex protocols in API Version 2.16 and above.", + "errorCode": "4000", + "errorInfo": {}, + "errorType": "ExceptionInProtocolError", + "wrappedErrors": [ + { + "detail": "opentrons.protocols.api_support.util.APIVersionError: Fixed Trash is not supported on Flex protocols in API Version 2.16 and above.", + "errorCode": "4000", + "errorInfo": { + "args": "('Fixed Trash is not supported on Flex protocols in API Version 2.16 and above.',)", + "class": "APIVersionError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute_python.py\", line 69, in run_python\n exec(\"run(__context)\", new_globs)\n\n File \"\", line 1, in \n\n File \"Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp.py\", line 15, in run\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/api_support/util.py\", line 383, in _check_version_wrapper\n return decorated_obj(*args, **kwargs)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/protocol_context.py\", line 1071, in fixed_trash\n raise APIVersionError(\n" + }, + "errorType": "PythonException", + "wrappedErrors": [] + } + ] + } + ], + "files": [ + { + "name": "Flex_None_None_2_16_AnalysisError_AccessToFixedTrashProp.py", + "role": "main" + }, + { + "name": "cpx_4_tuberack_100ul.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_1000ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_200ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_50ul_rss.json", + "role": "labware" + }, + { + "name": "sample_labware.json", + "role": "labware" + } + ], + "labware": [], + "liquids": [], + "metadata": { + "author": "Derek Maggio ", + "protocolName": "QA Protocol - Analysis Error - Access to Fixed Trash Property" + }, + "modules": [], + "pipettes": [], + "robotType": "OT-3 Standard" +} diff --git a/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_TrashBinInCol2][Flex_None_None_2_16_AnalysisError_TrashBinInCol2].json b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_TrashBinInCol2][Flex_None_None_2_16_AnalysisError_TrashBinInCol2].json new file mode 100644 index 00000000000..1f06f8b9bd6 --- /dev/null +++ b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_TrashBinInCol2][Flex_None_None_2_16_AnalysisError_TrashBinInCol2].json @@ -0,0 +1,73 @@ +{ + "commands": [ + { + "commandType": "home", + "params": {}, + "result": {}, + "status": "succeeded" + } + ], + "config": { + "apiVersion": [ + 2, + 16 + ], + "protocolType": "python" + }, + "errors": [ + { + "detail": "InvalidTrashBinLocationError [line 15]: Invalid location for trash bin: C2.\nValid slots: Any slot in column 1 or 3.", + "errorCode": "4000", + "errorInfo": {}, + "errorType": "ExceptionInProtocolError", + "wrappedErrors": [ + { + "detail": "opentrons.protocol_api.validation.InvalidTrashBinLocationError: Invalid location for trash bin: C2.\nValid slots: Any slot in column 1 or 3.", + "errorCode": "4000", + "errorInfo": { + "args": "('Invalid location for trash bin: C2.\\nValid slots: Any slot in column 1 or 3.',)", + "class": "InvalidTrashBinLocationError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute_python.py\", line 69, in run_python\n exec(\"run(__context)\", new_globs)\n\n File \"\", line 1, in \n\n File \"Flex_None_None_2_16_AnalysisError_TrashBinInCol2.py\", line 15, in run\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/api_support/util.py\", line 383, in _check_version_wrapper\n return decorated_obj(*args, **kwargs)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/protocol_context.py\", line 484, in load_trash_bin\n addressable_area_name = validation.ensure_and_convert_trash_bin_location(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/validation.py\", line 328, in ensure_and_convert_trash_bin_location\n raise InvalidTrashBinLocationError(\n" + }, + "errorType": "PythonException", + "wrappedErrors": [] + } + ] + } + ], + "files": [ + { + "name": "Flex_None_None_2_16_AnalysisError_TrashBinInCol2.py", + "role": "main" + }, + { + "name": "cpx_4_tuberack_100ul.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_1000ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_200ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_50ul_rss.json", + "role": "labware" + }, + { + "name": "sample_labware.json", + "role": "labware" + } + ], + "labware": [], + "liquids": [], + "metadata": { + "author": "Derek Maggio ", + "protocolName": "QA Protocol - Analysis Error - Trash Bin in Column 2" + }, + "modules": [], + "pipettes": [], + "robotType": "OT-3 Standard" +} diff --git a/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3][Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3].json b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3][Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3].json new file mode 100644 index 00000000000..fb1c316c43e --- /dev/null +++ b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3][Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3].json @@ -0,0 +1,147 @@ +{ + "commands": [ + { + "commandType": "home", + "params": {}, + "result": {}, + "status": "succeeded" + }, + { + "commandType": "loadLabware", + "params": { + "loadName": "nest_1_reservoir_290ml", + "location": { + "addressableAreaName": "C4" + }, + "namespace": "opentrons", + "version": 1 + }, + "result": { + "definition": { + "allowedRoles": [], + "brand": { + "brand": "NEST", + "brandId": [ + "360206", + "360266" + ], + "links": [ + "https://www.nest-biotech.com/reagent-reserviors" + ] + }, + "cornerOffsetFromSlot": { + "x": 0, + "y": 0, + "z": 0 + }, + "dimensions": { + "xDimension": 127.76, + "yDimension": 85.47, + "zDimension": 44.4 + }, + "gripperOffsets": {}, + "groups": [ + { + "metadata": { + "wellBottomShape": "v" + }, + "wells": [ + "A1" + ] + } + ], + "metadata": { + "displayCategory": "reservoir", + "displayName": "NEST 1 Well Reservoir 290 mL", + "displayVolumeUnits": "mL", + "tags": [] + }, + "namespace": "opentrons", + "ordering": [ + [ + "A1" + ] + ], + "parameters": { + "format": "trough", + "isMagneticModuleCompatible": false, + "isTiprack": false, + "loadName": "nest_1_reservoir_290ml", + "quirks": [ + "centerMultichannelOnWells", + "touchTipDisabled" + ] + }, + "schemaVersion": 2, + "stackingOffsetWithLabware": {}, + "stackingOffsetWithModule": {}, + "version": 1, + "wells": { + "A1": { + "depth": 39.55, + "shape": "rectangular", + "totalLiquidVolume": 290000, + "x": 63.88, + "xDimension": 106.8, + "y": 42.74, + "yDimension": 71.2, + "z": 4.85 + } + } + } + }, + "status": "succeeded" + } + ], + "config": { + "apiVersion": [ + 2, + 16 + ], + "protocolType": "python" + }, + "errors": [], + "files": [ + { + "name": "Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol3.py", + "role": "main" + }, + { + "name": "cpx_4_tuberack_100ul.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_1000ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_200ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_50ul_rss.json", + "role": "labware" + }, + { + "name": "sample_labware.json", + "role": "labware" + } + ], + "labware": [ + { + "definitionUri": "opentrons/nest_1_reservoir_290ml/1", + "loadName": "nest_1_reservoir_290ml", + "location": { + "addressableAreaName": "C4" + } + } + ], + "liquids": [], + "metadata": { + "author": "Derek Maggio ", + "protocolName": "QA Protocol - Analysis Error - Trash Bin in Staging Area Column 3" + }, + "modules": [], + "pipettes": [], + "robotType": "OT-3 Standard" +} diff --git a/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4][Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4].json b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4][Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4].json new file mode 100644 index 00000000000..edfb140e8ed --- /dev/null +++ b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4][Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4].json @@ -0,0 +1,73 @@ +{ + "commands": [ + { + "commandType": "home", + "params": {}, + "result": {}, + "status": "succeeded" + } + ], + "config": { + "apiVersion": [ + 2, + 16 + ], + "protocolType": "python" + }, + "errors": [ + { + "detail": "ValueError [line 15]: Staging areas not permitted for trash bin.", + "errorCode": "4000", + "errorInfo": {}, + "errorType": "ExceptionInProtocolError", + "wrappedErrors": [ + { + "detail": "ValueError: Staging areas not permitted for trash bin.", + "errorCode": "4000", + "errorInfo": { + "args": "('Staging areas not permitted for trash bin.',)", + "class": "ValueError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute_python.py\", line 69, in run_python\n exec(\"run(__context)\", new_globs)\n\n File \"\", line 1, in \n\n File \"Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4.py\", line 15, in run\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/api_support/util.py\", line 383, in _check_version_wrapper\n return decorated_obj(*args, **kwargs)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/protocol_context.py\", line 483, in load_trash_bin\n raise ValueError(\"Staging areas not permitted for trash bin.\")\n" + }, + "errorType": "PythonException", + "wrappedErrors": [] + } + ] + } + ], + "files": [ + { + "name": "Flex_None_None_2_16_AnalysisError_TrashBinInStagingAreaCol4.py", + "role": "main" + }, + { + "name": "cpx_4_tuberack_100ul.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_1000ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_200ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_50ul_rss.json", + "role": "labware" + }, + { + "name": "sample_labware.json", + "role": "labware" + } + ], + "labware": [], + "liquids": [], + "metadata": { + "author": "Derek Maggio ", + "protocolName": "QA Protocol - Analysis Error - Trash Bin in Staging Area Column 4" + }, + "modules": [], + "pipettes": [], + "robotType": "OT-3 Standard" +} diff --git a/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol][Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol].json b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol][Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol].json new file mode 100644 index 00000000000..a0274a96f5d --- /dev/null +++ b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol][Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol].json @@ -0,0 +1,73 @@ +{ + "commands": [ + { + "commandType": "home", + "params": {}, + "result": {}, + "status": "succeeded" + } + ], + "config": { + "apiVersion": [ + 2, + 16 + ], + "protocolType": "python" + }, + "errors": [ + { + "detail": "ValueError [line 15]: A magneticModuleType cannot be loaded into slot C1", + "errorCode": "4000", + "errorInfo": {}, + "errorType": "ExceptionInProtocolError", + "wrappedErrors": [ + { + "detail": "ValueError: A magneticModuleType cannot be loaded into slot C1", + "errorCode": "4000", + "errorInfo": { + "args": "('A magneticModuleType cannot be loaded into slot C1',)", + "class": "ValueError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute_python.py\", line 69, in run_python\n exec(\"run(__context)\", new_globs)\n\n File \"\", line 1, in \n\n File \"Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol.py\", line 15, in run\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/api_support/util.py\", line 383, in _check_version_wrapper\n return decorated_obj(*args, **kwargs)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/protocol_context.py\", line 779, in load_module\n module_core = self._core.load_module(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/core/engine/protocol.py\", line 379, in load_module\n self._ensure_module_location(normalized_deck_slot, module_type)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/core/engine/protocol.py\", line 552, in _ensure_module_location\n raise ValueError(f\"A {module_type.value} cannot be loaded into slot {slot}\")\n" + }, + "errorType": "PythonException", + "wrappedErrors": [] + } + ] + } + ], + "files": [ + { + "name": "Flex_None_None_MM_2_16_AnalysisError_MagneticModuleInFlexProtocol.py", + "role": "main" + }, + { + "name": "cpx_4_tuberack_100ul.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_1000ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_200ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_50ul_rss.json", + "role": "labware" + }, + { + "name": "sample_labware.json", + "role": "labware" + } + ], + "labware": [], + "liquids": [], + "metadata": { + "author": "Derek Maggio ", + "protocolName": "QA Protocol - Analysis Error - Magnetic Module in Flex Protocol" + }, + "modules": [], + "pipettes": [], + "robotType": "OT-3 Standard" +} diff --git a/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2][Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2].json b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2][Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2].json new file mode 100644 index 00000000000..0776eef030a --- /dev/null +++ b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2][Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2].json @@ -0,0 +1,73 @@ +{ + "commands": [ + { + "commandType": "home", + "params": {}, + "result": {}, + "status": "succeeded" + } + ], + "config": { + "apiVersion": [ + 2, + 16 + ], + "protocolType": "python" + }, + "errors": [ + { + "detail": "ValueError [line 15]: A temperatureModuleType cannot be loaded into slot C2", + "errorCode": "4000", + "errorInfo": {}, + "errorType": "ExceptionInProtocolError", + "wrappedErrors": [ + { + "detail": "ValueError: A temperatureModuleType cannot be loaded into slot C2", + "errorCode": "4000", + "errorInfo": { + "args": "('A temperatureModuleType cannot be loaded into slot C2',)", + "class": "ValueError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute_python.py\", line 69, in run_python\n exec(\"run(__context)\", new_globs)\n\n File \"\", line 1, in \n\n File \"Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2.py\", line 15, in run\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/api_support/util.py\", line 383, in _check_version_wrapper\n return decorated_obj(*args, **kwargs)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/protocol_context.py\", line 779, in load_module\n module_core = self._core.load_module(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/core/engine/protocol.py\", line 379, in load_module\n self._ensure_module_location(normalized_deck_slot, module_type)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/core/engine/protocol.py\", line 552, in _ensure_module_location\n raise ValueError(f\"A {module_type.value} cannot be loaded into slot {slot}\")\n" + }, + "errorType": "PythonException", + "wrappedErrors": [] + } + ] + } + ], + "files": [ + { + "name": "Flex_None_None_TM_2_16_AnalysisError_ModuleInCol2.py", + "role": "main" + }, + { + "name": "cpx_4_tuberack_100ul.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_1000ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_200ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_50ul_rss.json", + "role": "labware" + }, + { + "name": "sample_labware.json", + "role": "labware" + } + ], + "labware": [], + "liquids": [], + "metadata": { + "author": "Derek Maggio ", + "protocolName": "QA Protocol - Analysis Error - Module in Column 2" + }, + "modules": [], + "pipettes": [], + "robotType": "OT-3 Standard" +} diff --git a/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3][Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3].json b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3][Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3].json new file mode 100644 index 00000000000..5cee447620f --- /dev/null +++ b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3][Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol3].json @@ -0,0 +1,611 @@ +{ + "commands": [ + { + "commandType": "home", + "params": {}, + "result": {}, + "status": "succeeded" + }, + { + "commandType": "loadLabware", + "params": { + "loadName": "nest_1_reservoir_290ml", + "location": { + "addressableAreaName": "C4" + }, + "namespace": "opentrons", + "version": 1 + }, + "result": { + "definition": { + "allowedRoles": [], + "brand": { + "brand": "NEST", + "brandId": [ + "360206", + "360266" + ], + "links": [ + "https://www.nest-biotech.com/reagent-reserviors" + ] + }, + "cornerOffsetFromSlot": { + "x": 0, + "y": 0, + "z": 0 + }, + "dimensions": { + "xDimension": 127.76, + "yDimension": 85.47, + "zDimension": 44.4 + }, + "gripperOffsets": {}, + "groups": [ + { + "metadata": { + "wellBottomShape": "v" + }, + "wells": [ + "A1" + ] + } + ], + "metadata": { + "displayCategory": "reservoir", + "displayName": "NEST 1 Well Reservoir 290 mL", + "displayVolumeUnits": "mL", + "tags": [] + }, + "namespace": "opentrons", + "ordering": [ + [ + "A1" + ] + ], + "parameters": { + "format": "trough", + "isMagneticModuleCompatible": false, + "isTiprack": false, + "loadName": "nest_1_reservoir_290ml", + "quirks": [ + "centerMultichannelOnWells", + "touchTipDisabled" + ] + }, + "schemaVersion": 2, + "stackingOffsetWithLabware": {}, + "stackingOffsetWithModule": {}, + "version": 1, + "wells": { + "A1": { + "depth": 39.55, + "shape": "rectangular", + "totalLiquidVolume": 290000, + "x": 63.88, + "xDimension": 106.8, + "y": 42.74, + "yDimension": 71.2, + "z": 4.85 + } + } + } + }, + "status": "succeeded" + }, + { + "commandType": "loadModule", + "params": { + "location": { + "slotName": "C3" + }, + "model": "temperatureModuleV2" + }, + "result": { + "definition": { + "calibrationPoint": { + "x": 11.7, + "y": 8.75, + "z": 80.09 + }, + "compatibleWith": [ + "temperatureModuleV1" + ], + "dimensions": { + "bareOverallHeight": 84.0, + "overLabwareHeight": 0.0 + }, + "displayName": "Temperature Module GEN2", + "gripperOffsets": { + "default": { + "dropOffset": { + "x": 0.0, + "y": 0.0, + "z": 1.0 + }, + "pickUpOffset": { + "x": 0.0, + "y": 0.0, + "z": 0.0 + } + } + }, + "labwareOffset": { + "x": -1.45, + "y": -0.15, + "z": 80.09 + }, + "model": "temperatureModuleV2", + "moduleType": "temperatureModuleType", + "otSharedSchema": "module/schemas/2", + "quirks": [], + "slotTransforms": { + "ot2_short_trash": { + "3": { + "labwareOffset": [ + [ + -1, + -0.15, + 0, + 0 + ], + [ + 0, + 0, + 0, + 1 + ], + [ + 0, + 0, + 0, + 1 + ], + [ + 0, + 0, + 0, + 1 + ] + ] + }, + "6": { + "labwareOffset": [ + [ + -1, + -0.15, + 0, + 0 + ], + [ + 0, + 0, + 0, + 1 + ], + [ + 0, + 0, + 0, + 1 + ], + [ + 0, + 0, + 0, + 1 + ] + ] + }, + "9": { + "labwareOffset": [ + [ + -1, + -0.15, + 0, + 0 + ], + [ + 0, + 0, + 0, + 1 + ], + [ + 0, + 0, + 0, + 1 + ], + [ + 0, + 0, + 0, + 1 + ] + ] + } + }, + "ot2_standard": { + "3": { + "labwareOffset": [ + [ + -1, + -0.3, + 0, + 0 + ], + [ + 0, + 0, + 0, + 1 + ], + [ + 0, + 0, + 0, + 1 + ], + [ + 0, + 0, + 0, + 1 + ] + ] + }, + "6": { + "labwareOffset": [ + [ + -1, + -0.3, + 0, + 0 + ], + [ + 0, + 0, + 0, + 1 + ], + [ + 0, + 0, + 0, + 1 + ], + [ + 0, + 0, + 0, + 1 + ] + ] + }, + "9": { + "labwareOffset": [ + [ + -1, + -0.3, + 0, + 0 + ], + [ + 0, + 0, + 0, + 1 + ], + [ + 0, + 0, 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"labware" + }, + { + "name": "opentrons_ot3_96_tiprack_50ul_rss.json", + "role": "labware" + }, + { + "name": "sample_labware.json", + "role": "labware" + } + ], + "labware": [ + { + "definitionUri": "opentrons/nest_1_reservoir_290ml/1", + "loadName": "nest_1_reservoir_290ml", + "location": { + "addressableAreaName": "C4" + } + } + ], + "liquids": [], + "metadata": { + "author": "Derek Maggio ", + "protocolName": "QA Protocol - Analysis Error - Module in Staging Area Column 3" + }, + "modules": [ + { + "location": { + "slotName": "C3" + }, + "model": "temperatureModuleV2" + } + ], + "pipettes": [], + "robotType": "OT-3 Standard" +} diff --git a/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4][Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4].json b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4][Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4].json new file mode 100644 index 00000000000..d69bcec641e --- /dev/null +++ b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4][Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4].json @@ -0,0 +1,73 @@ +{ + "commands": [ + { + "commandType": "home", + "params": {}, + "result": {}, + "status": "succeeded" + } + ], + "config": { + "apiVersion": [ + 2, + 16 + ], + "protocolType": "python" + }, + "errors": [ + { + "detail": "ValueError [line 15]: Cannot load a module onto a staging slot.", + "errorCode": "4000", + "errorInfo": {}, + "errorType": "ExceptionInProtocolError", + "wrappedErrors": [ + { + "detail": "ValueError: Cannot load a module onto a staging slot.", + "errorCode": "4000", + "errorInfo": { + "args": "('Cannot load a module onto a staging slot.',)", + "class": "ValueError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute_python.py\", line 69, in run_python\n exec(\"run(__context)\", new_globs)\n\n File \"\", line 1, in \n\n File \"Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4.py\", line 15, in run\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/api_support/util.py\", line 383, in _check_version_wrapper\n return decorated_obj(*args, **kwargs)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/protocol_context.py\", line 777, in load_module\n raise ValueError(\"Cannot load a module onto a staging slot.\")\n" + }, + "errorType": "PythonException", + "wrappedErrors": [] + } + ] + } + ], + "files": [ + { + "name": "Flex_None_None_TM_2_16_AnalysisError_ModuleInStagingAreaCol4.py", + "role": "main" + }, + { + "name": "cpx_4_tuberack_100ul.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_1000ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_200ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_50ul_rss.json", + "role": "labware" + }, + { + "name": "sample_labware.json", + "role": "labware" + } + ], + "labware": [], + "liquids": [], + "metadata": { + "author": "Derek Maggio ", + "protocolName": "QA Protocol - Analysis Error - Module in Staging Area Column 4" + }, + "modules": [], + "pipettes": [], + "robotType": "OT-3 Standard" +} diff --git a/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment][Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment].json b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment][Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment].json new file mode 100644 index 00000000000..6ca8800e934 --- /dev/null +++ b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment][Flex_P1000MLeft_P50MRight_HS_MM_TC_TM_2_15_ABR3_Illumina_DNA_Enrichment].json @@ -0,0 +1,10145 @@ +{ + "commands": [ + { + "commandType": "home", + "params": {}, + "result": {}, + "status": "succeeded" + }, + { + "commandType": "custom", + "params": { + "legacyCommandText": "THIS IS A DRY RUN", + "legacyCommandType": "command.COMMENT" + }, + "result": {}, + "status": "succeeded" + }, + { + "commandType": "loadModule", + "params": { + "location": { + "slotName": "D1" + }, + "model": "heaterShakerModuleV1" + }, + "result": { + "definition": { 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a/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_None_None_2_12_Python310SyntaxRobotAnalysisOnlyError][OT2_None_None_2_12_Python310SyntaxRobotAnalysisOnlyError].json b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_None_None_2_12_Python310SyntaxRobotAnalysisOnlyError][OT2_None_None_2_12_Python310SyntaxRobotAnalysisOnlyError].json new file mode 100644 index 00000000000..dfb4ce4eeea --- /dev/null +++ b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_None_None_2_12_Python310SyntaxRobotAnalysisOnlyError][OT2_None_None_2_12_Python310SyntaxRobotAnalysisOnlyError].json @@ -0,0 +1,100 @@ +{ + "commands": [ + { + "commandType": "home", + "params": {}, + "result": {}, + "status": "succeeded" + }, + { + "commandType": "custom", + "params": { + "legacyCommandText": "Where is the point? 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(1,1) The point is located somewhere else on the plane.", + "legacyCommandType": "command.COMMENT" + }, + "result": {}, + "status": "succeeded" + } + ], + "config": { + "apiVersion": [ + 2, + 12 + ], + "protocolType": "python" + }, + "errors": [], + "files": [ + { + "name": "OT2_None_None_2_12_Python310SyntaxRobotAnalysisOnlyError.py", + "role": "main" + }, + { + "name": "cpx_4_tuberack_100ul.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_1000ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_200ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_50ul_rss.json", + "role": "labware" + }, + { + "name": "sample_labware.json", + "role": "labware" + } + ], + "labware": [ + { + "definitionUri": "opentrons/opentrons_1_trash_1100ml_fixed/1", + "loadName": "opentrons_1_trash_1100ml_fixed", + "location": { + "slotName": "12" + } + } + ], + "liquids": [], + "metadata": { + "apiLevel": "2.12", + "author": "Opentrons Engineering ", + "description": "Python 3.10 Only", + "protocolName": "🛠 3.10 only Python 🛠", + "source": "Software Testing Team" + }, + "modules": [], + "pipettes": [], + "robotType": "OT-2 Standard" +} diff --git a/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_None_None_2_13_PythonSyntaxError][OT2_None_None_2_13_PythonSyntaxError].json b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_None_None_2_13_PythonSyntaxError][OT2_None_None_2_13_PythonSyntaxError].json new file mode 100644 index 00000000000..14d0e86d33f --- /dev/null +++ b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_None_None_2_13_PythonSyntaxError][OT2_None_None_2_13_PythonSyntaxError].json @@ -0,0 +1,87 @@ +{ + "commands": [ + { + "commandType": "home", + "params": {}, + "result": {}, + "status": "succeeded" + } + ], + "config": { + "apiVersion": [ + 2, + 13 + ], + "protocolType": "python" + }, + "errors": [ + { + "detail": "No module named 'superspecialmagic'", + "errorCode": "4000", + "errorInfo": {}, + "errorType": "UnexpectedProtocolError", + "wrappedErrors": [ + { + "detail": "ModuleNotFoundError: No module named 'superspecialmagic'", + "errorCode": "4000", + "errorInfo": { + "args": "(\"No module named 'superspecialmagic'\",)", + "class": "ModuleNotFoundError", + "msg": "No module named 'superspecialmagic'", + "name": "superspecialmagic", + "path": "None", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/task_queue.py\", line 90, in _run\n await self._run_func()\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/legacy_wrappers.py\", line 173, in execute\n await to_thread.run_sync(run_protocol, protocol, context)\n\n File \"/usr/local/lib/python3.10/site-packages/anyio/to_thread.py\", line 28, in run_sync\n return await get_asynclib().run_sync_in_worker_thread(func, *args, cancellable=cancellable,\n\n File \"/usr/local/lib/python3.10/site-packages/anyio/_backends/_asyncio.py\", line 802, in run_sync_in_worker_thread\n return await future\n\n File \"/usr/local/lib/python3.10/site-packages/anyio/_backends/_asyncio.py\", line 740, in run\n result = func(*args)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute.py\", line 27, in run_protocol\n run_python(protocol, context)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute_python.py\", line 46, in run_python\n exec(proto.contents, new_globs)\n\n File \"OT2_None_None_2_13_PythonSyntaxError.py\", line 4, in \n" + }, + "errorType": "PythonException", + "wrappedErrors": [] + } + ] + } + ], + "files": [ + { + "name": "OT2_None_None_2_13_PythonSyntaxError.py", + "role": "main" + }, + { + "name": "cpx_4_tuberack_100ul.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_1000ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_200ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_50ul_rss.json", + "role": "labware" + }, + { + "name": "sample_labware.json", + "role": "labware" + } + ], + "labware": [ + { + "definitionUri": "opentrons/opentrons_1_trash_1100ml_fixed/1", + "loadName": "opentrons_1_trash_1100ml_fixed", + "location": { + "slotName": "12" + } + } + ], + "liquids": [], + "metadata": { + "apiLevel": "2.13", + "author": "Opentrons Engineering ", + "description": "import superspecialmagic", + "protocolName": "bad import", + "source": "Software Testing Team" + }, + "modules": [], + "pipettes": [], + "robotType": "OT-2 Standard" +} diff --git a/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P1000SLeft_None_6_1_SimpleTransfer][OT2_P1000SLeft_None_6_1_SimpleTransfer].json b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P1000SLeft_None_6_1_SimpleTransfer][OT2_P1000SLeft_None_6_1_SimpleTransfer].json new file mode 100644 index 00000000000..8e5e354275c --- /dev/null +++ b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P1000SLeft_None_6_1_SimpleTransfer][OT2_P1000SLeft_None_6_1_SimpleTransfer].json @@ -0,0 +1,1907 @@ +{ + "commands": [ + { + "commandType": "home", + "params": {}, + "result": {}, + "status": "succeeded" + }, + { + "commandType": "loadPipette", + "params": { + "mount": "left", + "pipetteName": "p1000_single_gen2" + }, + "result": {}, + "status": "succeeded" + }, + { + "commandType": "loadLabware", + "params": { + "displayName": "Opentrons 96 Tip Rack 1000 µL", + "loadName": "opentrons_96_tiprack_1000ul", + "location": { + "slotName": "1" + }, + "namespace": "opentrons", + "version": 1 + }, + "result": { + "definition": { + "allowedRoles": [], + "brand": { + "brand": 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"totalLiquidVolume": 20, + "x": 86.38, + "y": 74.24, + "z": 25.49 + }, + "B1": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 14.38, + "y": 65.24, + "z": 25.49 + }, + "B10": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 95.38, + "y": 65.24, + "z": 25.49 + }, + "B11": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 104.38, + "y": 65.24, + "z": 25.49 + }, + "B12": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 113.38, + "y": 65.24, + "z": 25.49 + }, + "B2": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 23.38, + "y": 65.24, + "z": 25.49 + }, + "B3": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 32.38, + "y": 65.24, + "z": 25.49 + }, + "B4": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 41.38, + "y": 65.24, + "z": 25.49 + }, + "B5": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 50.38, + "y": 65.24, + "z": 25.49 + }, + "B6": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 59.38, + "y": 65.24, + "z": 25.49 + }, + "B7": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 68.38, + "y": 65.24, + "z": 25.49 + }, + "B8": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 77.38, + "y": 65.24, + "z": 25.49 + }, + "B9": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 86.38, + "y": 65.24, + "z": 25.49 + }, + "C1": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 14.38, + "y": 56.24, + "z": 25.49 + }, + "C10": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 95.38, + "y": 56.24, + "z": 25.49 + }, + "C11": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 104.38, + "y": 56.24, + "z": 25.49 + }, + "C12": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 113.38, + "y": 56.24, + "z": 25.49 + }, + "C2": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 23.38, + "y": 56.24, + "z": 25.49 + }, + "C3": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 32.38, + "y": 56.24, + "z": 25.49 + }, + "C4": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 41.38, + "y": 56.24, + "z": 25.49 + }, + "C5": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 50.38, + "y": 56.24, + "z": 25.49 + }, + "C6": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 59.38, + "y": 56.24, + "z": 25.49 + }, + "C7": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 68.38, + "y": 56.24, + "z": 25.49 + }, + "C8": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 77.38, + "y": 56.24, + "z": 25.49 + }, + "C9": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 86.38, + "y": 56.24, + "z": 25.49 + }, + "D1": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 14.38, + "y": 47.24, + "z": 25.49 + }, + "D10": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 95.38, + "y": 47.24, + "z": 25.49 + }, + "D11": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 104.38, + "y": 47.24, + "z": 25.49 + }, + "D12": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 113.38, + "y": 47.24, + "z": 25.49 + }, + "D2": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 23.38, + "y": 47.24, + "z": 25.49 + }, + "D3": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 32.38, + "y": 47.24, + "z": 25.49 + }, + "D4": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 41.38, + "y": 47.24, + "z": 25.49 + }, + "D5": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 50.38, + "y": 47.24, + "z": 25.49 + }, + "D6": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 59.38, + "y": 47.24, + "z": 25.49 + }, + "D7": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 68.38, + "y": 47.24, + "z": 25.49 + }, + "D8": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 77.38, + "y": 47.24, + "z": 25.49 + }, + "D9": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 86.38, + "y": 47.24, + "z": 25.49 + }, + "E1": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 14.38, + "y": 38.24, + "z": 25.49 + }, + "E10": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 95.38, + "y": 38.24, + "z": 25.49 + }, + "E11": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 104.38, + "y": 38.24, + "z": 25.49 + }, + "E12": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 113.38, + "y": 38.24, + "z": 25.49 + }, + "E2": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 23.38, + "y": 38.24, + "z": 25.49 + }, + "E3": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 32.38, + "y": 38.24, + "z": 25.49 + }, + "E4": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 41.38, + "y": 38.24, + "z": 25.49 + }, + "E5": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 50.38, + "y": 38.24, + "z": 25.49 + }, + "E6": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 59.38, + "y": 38.24, + "z": 25.49 + }, + "E7": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 68.38, + "y": 38.24, + "z": 25.49 + }, + "E8": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 77.38, + "y": 38.24, + "z": 25.49 + }, + "E9": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 86.38, + "y": 38.24, + "z": 25.49 + }, + "F1": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 14.38, + "y": 29.24, + "z": 25.49 + }, + "F10": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 95.38, + "y": 29.24, + "z": 25.49 + }, + "F11": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 104.38, + "y": 29.24, + "z": 25.49 + }, + "F12": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 113.38, + "y": 29.24, + "z": 25.49 + }, + "F2": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 23.38, + "y": 29.24, + "z": 25.49 + }, + "F3": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 32.38, + "y": 29.24, + "z": 25.49 + }, + "F4": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 41.38, + "y": 29.24, + "z": 25.49 + }, + "F5": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 50.38, + "y": 29.24, + "z": 25.49 + }, + "F6": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 59.38, + "y": 29.24, + "z": 25.49 + }, + "F7": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 68.38, + "y": 29.24, + "z": 25.49 + }, + "F8": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 77.38, + "y": 29.24, + "z": 25.49 + }, + "F9": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 86.38, + "y": 29.24, + "z": 25.49 + }, + "G1": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 14.38, + "y": 20.24, + "z": 25.49 + }, + "G10": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 95.38, + "y": 20.24, + "z": 25.49 + }, + "G11": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 104.38, + "y": 20.24, + "z": 25.49 + }, + "G12": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 113.38, + "y": 20.24, + "z": 25.49 + }, + "G2": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 23.38, + "y": 20.24, + "z": 25.49 + }, + "G3": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 32.38, + "y": 20.24, + "z": 25.49 + }, + "G4": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 41.38, + "y": 20.24, + "z": 25.49 + }, + "G5": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 50.38, + "y": 20.24, + "z": 25.49 + }, + "G6": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 59.38, + "y": 20.24, + "z": 25.49 + }, + "G7": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 68.38, + "y": 20.24, + "z": 25.49 + }, + "G8": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 77.38, + "y": 20.24, + "z": 25.49 + }, + "G9": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 86.38, + "y": 20.24, + "z": 25.49 + }, + "H1": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 14.38, + "y": 11.24, + "z": 25.49 + }, + "H10": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 95.38, + "y": 11.24, + "z": 25.49 + }, + "H11": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 104.38, + "y": 11.24, + "z": 25.49 + }, + "H12": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 113.38, + "y": 11.24, + "z": 25.49 + }, + "H2": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 23.38, + "y": 11.24, + "z": 25.49 + }, + "H3": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 32.38, + "y": 11.24, + "z": 25.49 + }, + "H4": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 41.38, + "y": 11.24, + "z": 25.49 + }, + "H5": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 50.38, + "y": 11.24, + "z": 25.49 + }, + "H6": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 59.38, + "y": 11.24, + "z": 25.49 + }, + "H7": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 68.38, + "y": 11.24, + "z": 25.49 + }, + "H8": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 77.38, + "y": 11.24, + "z": 25.49 + }, + "H9": { + "depth": 39.2, + "diameter": 3.27, + "shape": "circular", + "totalLiquidVolume": 20, + "x": 86.38, + "y": 11.24, + "z": 25.49 + } + } + } + }, + "status": "succeeded" + }, + { + "commandType": "pickUpTip", + "params": { + "wellLocation": { + "offset": { + "x": 0, + "y": 0, + "z": 0 + }, + "origin": "top" + }, + "wellName": "A1" + }, + "result": { + "position": { + "x": 0.0, + "y": 0.0, + "z": 0.0 + }, + "tipDiameter": 0, + "tipLength": 51.099999999999994, + "tipVolume": 300 + }, + "status": "succeeded" + }, + { + "commandType": "aspirate", + "error": { + "detail": "Cannot aspirate more than pipette max volume", + "errorCode": "4000", + "errorInfo": {}, + "errorType": "LegacyContextCommandError", + "wrappedErrors": [ + { + "detail": "AssertionError: Cannot aspirate more than pipette max volume", + "errorCode": "4000", + "errorInfo": { + "args": "('Cannot aspirate more than pipette max volume',)", + "class": "AssertionError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/commands/publisher.py\", line 113, in publish_context\n yield\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/instrument_context.py\", line 267, in aspirate\n self._core.aspirate(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/core/legacy_simulator/legacy_instrument_core.py\", line 119, in aspirate\n new_volume <= self._pipette_dict[\"working_volume\"]\n" + }, + "errorType": "PythonException", + "wrappedErrors": [] + } + ] + }, + "params": { + "flowRate": 94.0, + "volume": 1000.0, + "wellLocation": { + "offset": { + "x": 0, + "y": 0, + "z": 0 + }, + "origin": "top" + }, + "wellName": "A1" + }, + "status": "failed" + } + ], + "config": { + "protocolType": "json", + "schemaVersion": 4 + }, + "errors": [ + { + "detail": "Cannot aspirate more than pipette max volume", + "errorCode": "4000", + "errorInfo": {}, + "errorType": "UnexpectedProtocolError", + "wrappedErrors": [ + { + "detail": "AssertionError: Cannot aspirate more than pipette max volume", + "errorCode": "4000", + "errorInfo": { + "args": "('Cannot aspirate more than pipette max volume',)", + "class": "AssertionError", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/task_queue.py\", line 90, in _run\n await self._run_func()\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_runner/legacy_wrappers.py\", line 173, in execute\n await to_thread.run_sync(run_protocol, protocol, context)\n\n File \"/usr/local/lib/python3.10/site-packages/anyio/to_thread.py\", line 28, in run_sync\n return await get_asynclib().run_sync_in_worker_thread(func, *args, cancellable=cancellable,\n\n File \"/usr/local/lib/python3.10/site-packages/anyio/_backends/_asyncio.py\", line 802, in run_sync_in_worker_thread\n return await future\n\n File \"/usr/local/lib/python3.10/site-packages/anyio/_backends/_asyncio.py\", line 740, in run\n result = func(*args)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute.py\", line 45, in run_protocol\n execute_json_v4.dispatch_json(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute_json_v4.py\", line 272, in dispatch_json\n pipette_command_map[command_type]( # type: ignore\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute_json_v3.py\", line 159, in _aspirate\n pipette.aspirate(volume, location)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/api_support/util.py\", line 383, in _check_version_wrapper\n return decorated_obj(*args, **kwargs)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/instrument_context.py\", line 267, in aspirate\n self._core.aspirate(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/core/legacy_simulator/legacy_instrument_core.py\", line 119, in aspirate\n new_volume <= self._pipette_dict[\"working_volume\"]\n" + }, + "errorType": "PythonException", + "wrappedErrors": [] + } + ] + } + ], + "files": [ + { + "name": "OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40Error.json", + "role": "main" + }, + { + "name": "cpx_4_tuberack_100ul.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_1000ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_200ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_50ul_rss.json", + "role": "labware" + }, + { + "name": "sample_labware.json", + "role": "labware" + } + ], + "labware": [ + { + "definitionUri": "opentrons/opentrons_1_trash_1100ml_fixed/1", + "loadName": "opentrons_1_trash_1100ml_fixed", + "location": { + "slotName": "12" + } + }, + { + "definitionUri": "opentrons/opentrons_1_trash_1100ml_fixed/1", + "displayName": "Trash", + "loadName": "opentrons_1_trash_1100ml_fixed", + "location": { + "slotName": "12" + } + }, + { + "definitionUri": "opentrons/opentrons_96_tiprack_10ul/1", + "displayName": "Opentrons 96 Tip Rack 10 µL", + "loadName": "opentrons_96_tiprack_10ul", + "location": { + "slotName": "2" + } + }, + { + "definitionUri": "opentrons/opentrons_96_tiprack_300ul/1", + "displayName": "Opentrons 96 Tip Rack 300 µL", + "loadName": "opentrons_96_tiprack_300ul", + "location": { + "slotName": "4" + } + }, + { + "definitionUri": "opentrons/agilent_1_reservoir_290ml/1", + "displayName": "A1", + "loadName": "agilent_1_reservoir_290ml", + "location": { + "slotName": "5" + } + }, + { + "definitionUri": "opentrons/nest_12_reservoir_15ml/1", + "displayName": "A2", + "loadName": "nest_12_reservoir_15ml", + "location": { + "slotName": "6" + } + }, + { + "definitionUri": "opentrons/nest_96_wellplate_100ul_pcr_full_skirt/1", + "displayName": "Mag Labware", + "loadName": "nest_96_wellplate_100ul_pcr_full_skirt", + "location": {} + }, + { + "definitionUri": "opentrons/opentrons_96_aluminumblock_nest_wellplate_100ul/1", + "displayName": "TempDeck LW", + "loadName": "opentrons_96_aluminumblock_nest_wellplate_100ul", + "location": {} + }, + { + "definitionUri": "opentrons/opentrons_96_tiprack_20ul/1", + "displayName": "Opentrons 96 Tip Rack 20 µL", + "loadName": "opentrons_96_tiprack_20ul", + "location": { + "slotName": "9" + } + } + ], + "liquids": [], + "metadata": { + "author": "NN MM", + "category": null, + "description": "Protocol for e2e tests", + "protocolName": "script_pur_sample_1", + "subcategory": null, + "tags": [] + }, + "modules": [ + { + "location": { + "slotName": "1" + }, + "model": "magneticModuleV2" + }, + { + "location": { + "slotName": "3" + }, + "model": "temperatureModuleV2" + }, + { + "location": { + "slotName": "7" + }, + "model": "thermocyclerModuleV1" + } + ], + "pipettes": [ + { + "mount": "left", + "pipetteName": "p300_multi_gen2" + }, + { + "mount": "right", + "pipetteName": "p20_single_gen2" + } + ], + "robotType": "OT-2 Standard" +} diff --git a/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40][OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40].json b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40][OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40].json new file mode 100644 index 00000000000..3d1a5e973ae --- /dev/null +++ b/app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40][OT2_P300M_P20S_MM_TM_TC1_5_2_6_PD40].json @@ -0,0 +1,9621 @@ +{ + "commands": [ + { + "commandType": "home", + "params": {}, + "result": {}, + "status": "succeeded" + }, + { + "commandType": "loadPipette", + "params": { + "mount": "left", + "pipetteName": "p300_multi_gen2" + }, + "result": {}, + "status": "succeeded" + }, + { + "commandType": "loadPipette", + "params": { + "mount": "right", + "pipetteName": "p20_single_gen2" + }, + "result": {}, + "status": "succeeded" + }, + { + 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\"OT2_P300S_Thermocycler_Moam_Error.py\", line 19, in run\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/api_support/util.py\", line 383, in _check_version_wrapper\n return decorated_obj(*args, **kwargs)\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/protocol_context.py\", line 779, in load_module\n module_core = self._core.load_module(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/core/legacy/legacy_protocol_core.py\", line 333, in load_module\n self._deck_layout[resolved_location] = geometry\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/protocol_api/core/legacy/deck.py\", line 177, in __setitem__\n deck_conflict.check(\n\n File \"/usr/local/lib/python3.10/site-packages/opentrons/motion_planning/deck_conflict.py\", line 192, in check\n raise DeckConflictError(\n" + }, + "errorType": "PythonException", + "wrappedErrors": [] + } + ] + } + ], + "files": [ + { + "name": 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"diameter": 6.86, + "shape": "circular", + "totalLiquidVolume": 360, + "x": 95.38, + "y": 11.24, + "z": 3.55 + }, + "H11": { + "depth": 10.67, + "diameter": 6.86, + "shape": "circular", + "totalLiquidVolume": 360, + "x": 104.38, + "y": 11.24, + "z": 3.55 + }, + "H12": { + "depth": 10.67, + "diameter": 6.86, + "shape": "circular", + "totalLiquidVolume": 360, + "x": 113.38, + "y": 11.24, + "z": 3.55 + }, + "H2": { + "depth": 10.67, + "diameter": 6.86, + "shape": "circular", + "totalLiquidVolume": 360, + "x": 23.38, + "y": 11.24, + "z": 3.55 + }, + "H3": { + "depth": 10.67, + "diameter": 6.86, + "shape": "circular", + "totalLiquidVolume": 360, + "x": 32.38, + "y": 11.24, + "z": 3.55 + }, + "H4": { + "depth": 10.67, + "diameter": 6.86, + "shape": "circular", + "totalLiquidVolume": 360, + "x": 41.38, + "y": 11.24, + "z": 3.55 + }, + "H5": { + "depth": 10.67, + "diameter": 6.86, + "shape": "circular", + "totalLiquidVolume": 360, + "x": 50.38, + "y": 11.24, + "z": 3.55 + }, + "H6": { + "depth": 10.67, + "diameter": 6.86, + "shape": "circular", + "totalLiquidVolume": 360, + "x": 59.38, + "y": 11.24, + "z": 3.55 + }, + "H7": { + "depth": 10.67, + "diameter": 6.86, + "shape": "circular", + "totalLiquidVolume": 360, + "x": 68.38, + "y": 11.24, + "z": 3.55 + }, + "H8": { + "depth": 10.67, + "diameter": 6.86, + "shape": "circular", + "totalLiquidVolume": 360, + "x": 77.38, + "y": 11.24, + "z": 3.55 + }, + "H9": { + "depth": 10.67, + "diameter": 6.86, + "shape": "circular", + "totalLiquidVolume": 360, + "x": 86.38, + "y": 11.24, + "z": 3.55 + } + } + } + }, + "status": "succeeded" + }, + { + "commandType": "loadPipette", + "params": { + "mount": "right", + "pipetteName": "p300_single_gen2" + }, + "result": {}, + "status": "succeeded" + }, + { + "commandType": "loadPipette", + "params": { + "mount": "left", + "pipetteName": "p300_single_gen2" + }, + "result": {}, + "status": "succeeded" + }, + { + "commandType": "pickUpTip", + "params": { + "wellLocation": { + "offset": { + "x": 0, + "y": 0, + "z": 0 + }, + "origin": "top" + }, + "wellName": "A1" + }, + "result": { + "position": { + "x": 0.0, + "y": 0.0, + "z": 0.0 + }, + "tipDiameter": 0, + "tipLength": 51.099999999999994, + "tipVolume": 300 + }, + "status": "succeeded" + }, + { + "commandType": "aspirate", + "params": { + "flowRate": 92.86, + "volume": 20.0, + "wellLocation": { + "offset": { + "x": 0, + "y": 0, + "z": 0 + }, + "origin": "top" + }, + "wellName": "A1" + }, + "result": { + "position": { + "x": 0.0, + "y": 0.0, + "z": 0.0 + }, + "volume": 20.0 + }, + "status": "succeeded" + }, + { + "commandType": "dispense", + "params": { + "flowRate": 92.86, + "volume": 20.0, + "wellLocation": { + "offset": { + "x": 0, + "y": 0, + "z": 0 + }, + "origin": "top" + }, + "wellName": "A1" + }, + "result": { + "position": { + "x": 0.0, + "y": 0.0, + "z": 0.0 + }, + "volume": 20.0 + }, + "status": "succeeded" + }, + { + "commandType": "dropTip", + "params": { + "alternateDropLocation": false, + "wellLocation": { + "offset": { + "x": 0, + "y": 0, + "z": 0 + }, + "origin": "default" + }, + "wellName": "A1" + }, + "result": { + "position": { + "x": 0.0, + "y": 0.0, + "z": 0.0 + } + }, + "status": "succeeded" + } + ], + "config": { + "apiVersion": [ + 2, + 7 + ], + "protocolType": "python" + }, + "errors": [ + { + "detail": "AttributeError [line 23]: 'InstrumentContext' object has no attribute 'pair_with'", + "errorCode": "4000", + "errorInfo": {}, + "errorType": "ExceptionInProtocolError", + "wrappedErrors": [ + { + "detail": "AttributeError: 'InstrumentContext' object has no attribute 'pair_with'", + "errorCode": "4000", + "errorInfo": { + "args": "(\"'InstrumentContext' object has no attribute 'pair_with'\",)", + "class": "AttributeError", + "name": "pair_with", + "obj": "P300 Single-Channel GEN2 on left mount", + "traceback": " File \"/usr/local/lib/python3.10/site-packages/opentrons/protocols/execution/execute_python.py\", line 69, in run_python\n exec(\"run(__context)\", new_globs)\n\n File \"\", line 1, in \n\n File \"OT2_P300S_Twinning_Error.py\", line 23, in run\n" + }, + "errorType": "PythonException", + "wrappedErrors": [] + } + ] + } + ], + "files": [ + { + "name": "OT2_P300S_Twinning_Error.py", + "role": "main" + }, + { + "name": "cpx_4_tuberack_100ul.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_1000ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_200ul_rss.json", + "role": "labware" + }, + { + "name": "opentrons_ot3_96_tiprack_50ul_rss.json", + "role": "labware" + }, + { + "name": "sample_labware.json", + "role": "labware" + } + ], + "labware": [ + { + "definitionUri": "opentrons/opentrons_1_trash_1100ml_fixed/1", + "loadName": "opentrons_1_trash_1100ml_fixed", + "location": { + "slotName": "12" + } + }, + { + "definitionUri": "opentrons/opentrons_96_tiprack_300ul/1", + "loadName": "opentrons_96_tiprack_300ul", + "location": { + "slotName": "1" + } + }, + { + "definitionUri": "opentrons/usascientific_12_reservoir_22ml/1", + "loadName": "usascientific_12_reservoir_22ml", + "location": { + "slotName": "2" + } + }, + { + "definitionUri": "opentrons/corning_96_wellplate_360ul_flat/1", + "loadName": "corning_96_wellplate_360ul_flat", + "location": { + "slotName": "3" + } + } + ], + "liquids": [], + "metadata": { + "apiLevel": "2.7", + "author": "Name ", + "description": "Simple paired pipette protocol", + "protocolName": "My Protocol" + }, + "modules": [], + "pipettes": [ + { + "mount": "right", + "pipetteName": "p300_single_gen2" + }, + { + "mount": "left", + "pipetteName": "p300_single_gen2" + } + ], + "robotType": "OT-2 Standard" +} diff --git a/app-testing/tests/analyses_snapshot_test.py b/app-testing/tests/analyses_snapshot_test.py new file mode 100644 index 00000000000..36fe84c1957 --- /dev/null +++ b/app-testing/tests/analyses_snapshot_test.py @@ -0,0 +1,116 @@ +import json +import os +from pathlib import Path +from typing import Any, List + +import pytest +from automation.data.protocol import Protocol +from automation.data.protocols import Protocols +from citools.generate_analyses import ANALYSIS_SUFFIX, generate_analyses_from_test +from syrupy.extensions.json import JSONSnapshotExtension +from syrupy.filters import props +from syrupy.types import SerializableData + +# not included in the snapshot +exclude = props( + "id", + "createdAt", + "startedAt", + "completedAt", + "lastModified", + "created", + "key", + "pipetteId", + "labwareId", + "serialNumber", + "moduleId", + "liquidId", +) + + +@pytest.fixture +def snapshot_exclude(snapshot: SerializableData) -> SerializableData: + return snapshot.with_defaults(exclude=exclude) + + +@pytest.fixture +def snapshot_json(snapshot_exclude: SerializableData) -> SerializableData: + return snapshot_exclude.with_defaults(extension_class=JSONSnapshotExtension) + + +def what_protocols() -> List[Protocol]: + protocols: Protocols = Protocols() + protocols_to_test: str = os.getenv("APP_ANALYSIS_TEST_PROTOCOLS", "upload_protocol") + tests: list[(Protocol)] = [] + for protocol_name in [x.strip() for x in protocols_to_test.split(",")]: + tests.append((getattr(protocols, protocol_name))) + return tests + + +@pytest.fixture(scope="session") +def analyze_protocols() -> None: + """Use the environment variable to select which protocols are used in the test.""" + tests = what_protocols() + # Generate target analyses + if not tests: + exit("No protocols to test.") + # !!!!! Docker Image with tag of TARGET must already be created + target = os.getenv("TARGET") + if not target: + raise AssertionError("Environment variable TARGET not set.") + else: + generate_analyses_from_test(tag=target, protocols=tests) + + +def sort_all_lists(d: Any, sort_key: str | None = None) -> Any: + """Recursively sorts lists in a nested dictionary. + + :param d: The dictionary or list to sort. + :param sort_key: The key to sort dictionaries on if they are in a list. + """ + if isinstance(d, dict): + return {k: sort_all_lists(v, sort_key) for k, v in d.items()} + elif isinstance(d, list): + # Sort each item in the list + sorted_list = [sort_all_lists(x, sort_key) for x in d] + # Try to sort the list if it contains comparable items + try: + if sort_key and all(isinstance(x, dict) and sort_key in x for x in sorted_list): + return sorted(sorted_list, key=lambda x: x[sort_key]) + else: + return sorted(sorted_list) + except TypeError: + # If items are not comparable, return the list as is + return sorted_list + else: + return d + + +# Read in what protocols to test from the environment variable +# APP_ANALYSIS_TEST_PROTOCOLS +# Generate all the analyses for the target version of the Opentrons repository +# Compare the analyses to the snapshots + + +@pytest.mark.parametrize( + "protocol", + what_protocols(), + ids=[x.file_name for x in what_protocols()], +) +def test_analysis_snapshot(analyze_protocols: None, snapshot_json: SerializableData, protocol: Protocol) -> None: + target = os.getenv("TARGET") + if not target: + raise AssertionError("Environment variable TARGET not set.") + analysis = Path( + Path(__file__).parent.parent, + "analysis_results", + f"{protocol.file_name}_{target}_{ANALYSIS_SUFFIX}", + ) + if analysis.exists(): + with open(analysis, "r") as f: + data = json.load(f) + print(f"Test name: {protocol.file_name}") + data = sort_all_lists(data, sort_key="name") + assert snapshot_json(name=protocol.file_name) == data + else: + raise AssertionError(f"Analysis file not found: {analysis}") diff --git a/app-testing/tests/app_settings_test.py b/app-testing/tests/app_settings_test.py index 343c0ba5feb..0b0d49f4c38 100644 --- a/app-testing/tests/app_settings_test.py +++ b/app-testing/tests/app_settings_test.py @@ -56,10 +56,7 @@ def test_app_settings( == "https://support.opentrons.com/s/article/Uninstall-the-Opentrons-App" ) assert app_settings.get_link_to_previous_releases().is_displayed() - assert ( - app_settings.get_link_to_previous_releases().get_attribute("href") - == "https://github.com/Opentrons/opentrons/releases" - ) + assert app_settings.get_link_to_previous_releases().get_attribute("href") == "https://github.com/Opentrons/opentrons/releases" app_settings.click_close_previous_software_modal() assert app_settings.get_link_app_robot_sync().is_displayed() diff --git a/app-testing/tests/protocol_analyze_test.py b/app-testing/tests/protocol_analyze_test.py index 1eb1d5e10b4..09e1f5b9cd0 100644 --- a/app-testing/tests/protocol_analyze_test.py +++ b/app-testing/tests/protocol_analyze_test.py @@ -47,10 +47,7 @@ def get_error_text(protocol_landing: ProtocolLanding, error_link: WebElement) -> return error_details -@pytest.mark.parametrize( - "protocol", - _what_protocols(), -) +@pytest.mark.parametrize("protocol", _what_protocols()) def test_analyses( driver: WebDriver, console: Console, @@ -74,9 +71,9 @@ def test_analyses( style="white on blue", ) drag_and_drop_file(labware_landing.get_drag_drop_file_button(), labware) - if labware_landing.get_success_toast_message( + if labware_landing.get_success_toast_message(filename=labware.name) or labware_landing.get_duplicate_error_toast_message( filename=labware.name - ) or labware_landing.get_duplicate_error_toast_message(filename=labware.name): + ): console.print( f"{labware.name} uploaded to app.", style="white on blue", @@ -109,10 +106,7 @@ def test_analyses( # Verifying elements on Protocol Landing Page # todo fix next line needs to be safe and print name not found assert protocol_landing.get_deckMap_protocol_landing(protocol_name=protocol.protocol_name).is_displayed() - assert ( - protocol_landing.get_protocol_name_text_protocol_landing(protocol_name=protocol.protocol_name) - == protocol.protocol_name - ) + assert protocol_landing.get_protocol_name_text_protocol_landing(protocol_name=protocol.protocol_name) == protocol.protocol_name # TODO validate robot diff --git a/app-testing/tests/protocol_landing_test.py b/app-testing/tests/protocol_landing_test.py index a3d8fcfddfa..b003b3495fe 100644 --- a/app-testing/tests/protocol_landing_test.py +++ b/app-testing/tests/protocol_landing_test.py @@ -43,10 +43,7 @@ def test_protocol_landing( # Verifying elements on Protocol Landing Page assert protocol_landing.get_import_button_protocol_landing().is_displayed() assert protocol_landing.get_deckMap_protocol_landing(protocol_name="script_pur_sample_1").is_displayed() - assert ( - protocol_landing.get_protocol_name_text_protocol_landing(protocol_name="script_pur_sample_1") - == "script_pur_sample_1" - ) + assert protocol_landing.get_protocol_name_text_protocol_landing(protocol_name="script_pur_sample_1") == "script_pur_sample_1" protocol_landing.click_overflow_menu() assert protocol_landing.get_show_in_folder().is_displayed() assert protocol_landing.get_run_protocol().is_displayed()