Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Ability to use FASTA files as input #573

Open
vkkodali opened this issue Jul 31, 2024 · 0 comments
Open

Ability to use FASTA files as input #573

vkkodali opened this issue Jul 31, 2024 · 0 comments

Comments

@vkkodali
Copy link

From what I can tell, fastp expects the input files to be in FASTQ format. Lately, SRA has stopped including original base qualities in the FASTQ files (all qualities are encoded as ?) which makes read trimming based on quality moot, and makes it pointless to download FASTQ files.

In this context, it would be nice feature to be able to run fastp on FASTA formatted files.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant