From 2b0c2b2ac5b79b7f3cf0ef49582ebfbfdd124db6 Mon Sep 17 00:00:00 2001 From: john681611 Date: Wed, 4 Oct 2023 10:59:06 +0100 Subject: [PATCH] get ORM working --- application/database/db.py | 85 ++++++++++++++++++++----------------- application/web/web_main.py | 3 +- 2 files changed, 47 insertions(+), 41 deletions(-) diff --git a/application/database/db.py b/application/database/db.py index a1a16aa26..9299d62d1 100644 --- a/application/database/db.py +++ b/application/database/db.py @@ -9,6 +9,7 @@ RelationshipTo, ArrayProperty, StructuredRel, + NeomodelPath, db, ) from sqlalchemy.orm import aliased @@ -205,7 +206,7 @@ class NeoNode(NeoDocument): hyperlink = StringProperty() @classmethod - def to_cre_def(self): + def to_cre_def(self, node): raise Exception(f"Shouldn't be parsing a NeoNode") @@ -215,17 +216,17 @@ class NeoStandard(NeoNode): section_id = StringProperty() @classmethod - def to_cre_def(self) -> cre_defs.Standard: + def to_cre_def(self, node) -> cre_defs.Standard: return cre_defs.Standard( - name=self.name, - id=self.id, - description=self.description, - tags=self.tags, - hyperlink=self.hyperlink, - version=self.version, - section=self.section, - sectionID=self.section_id, - subsection=self.subsection, + name=node.name, + id=node.id, + description=node.description, + tags=node.tags, + hyperlink=node.hyperlink, + version=node.version, + section=node.section, + sectionID=node.section_id, + subsection=node.subsection, ) @@ -233,30 +234,30 @@ class NeoTool(NeoStandard): tooltype = StringProperty(required=True) @classmethod - def to_cre_def(self) -> cre_defs.Tool: + def to_cre_def(self, node) -> cre_defs.Tool: return cre_defs.Tool( - name=self.name, - id=self.id, - description=self.description, - tags=self.tags, - hyperlink=self.hyperlink, - version=self.version, - section=self.section, - sectionID=self.section_id, - subsection=self.subsection, + name=node.name, + id=node.id, + description=node.description, + tags=node.tags, + hyperlink=node.hyperlink, + version=node.version, + section=node.section, + sectionID=node.section_id, + subsection=node.subsection, ) class NeoCode(NeoNode): @classmethod - def to_cre_def(self) -> cre_defs.Code: + def to_cre_def(self, node) -> cre_defs.Code: return cre_defs.Code( - name=self.name, - id=self.id, - description=self.description, - tags=self.tags, - hyperlink=self.hyperlink, - version=self.version, + name=node.name, + id=node.id, + description=node.description, + tags=node.tags, + hyperlink=node.hyperlink, + version=node.version, ) @@ -267,12 +268,12 @@ class NeoCRE(NeoDocument): # type: ignore same_as = RelationshipTo("NeoStandard", "SAME", model=SameRel) @classmethod - def to_cre_def(self) -> cre_defs.CRE: + def to_cre_def(self, node) -> cre_defs.CRE: return cre_defs.CRE( - name=self.name, - id=self.id, - description=self.description, - tags=self.tags, + name=node.name, + id=node.id, + description=node.description, + tags=node.tags, ) @@ -468,25 +469,31 @@ def gap_analysis(self, name_1, name_2): resolve_objects=True, ) - def format_segment(seg: StructuredRel): + def format_segment(seg: StructuredRel, nodes): relation_map = { RelatedRel: "RELATED", ContainsRel: "CONTAINS", LinkedToRel: "LINKED_TO", SameRel: "SAME", } + start_node = [ + node for node in nodes if node.element_id == seg._start_node_element_id + ][0] + end_node = [ + node for node in nodes if node.element_id == seg._end_node_element_id + ][0] return { - "start": NEO_DB.parse_node(seg.start_node()), - "end": NEO_DB.parse_node(seg.end_node()), + "start": NEO_DB.parse_node(start_node), + "end": NEO_DB.parse_node(end_node), "relationship": relation_map[type(seg)], } - def format_path_record(rec): + def format_path_record(rec: NeomodelPath): return { "start": NEO_DB.parse_node(rec.start_node), "end": NEO_DB.parse_node(rec.end_node), - "path": [format_segment(seg) for seg in rec.relationships], + "path": [format_segment(seg, rec.nodes) for seg in rec.relationships], } return [NEO_DB.parse_node(rec) for rec in base_standard], [ @@ -504,7 +511,7 @@ def standards(self) -> List[str]: @staticmethod def parse_node(node: NeoDocument) -> cre_defs.Document: - return node.to_cre_def() + return node.to_cre_def(node) class CRE_Graph: diff --git a/application/web/web_main.py b/application/web/web_main.py index cd2941d28..9119cc699 100644 --- a/application/web/web_main.py +++ b/application/web/web_main.py @@ -216,14 +216,13 @@ def find_document_by_tag() -> Any: @app.route("/rest/v1/gap_analysis", methods=["GET"]) -@cache.cached(timeout=50) +@cache.cached(timeout=50, query_string=True) def gap_analysis() -> Any: database = db.Node_collection() standards = request.args.getlist("standard") gap_analysis = database.gap_analysis(standards) if gap_analysis is None: return neo4j_not_running_rejection() - print(gap_analysis) return jsonify(gap_analysis)