From 28e6828911d74e1f34f4e8887603b13d7db86f37 Mon Sep 17 00:00:00 2001
From: john681611 <john681611@hotmail.com>
Date: Wed, 13 Sep 2023 16:37:30 +0100
Subject: [PATCH] Disable CRE_Graph auto population on startup

---
 application/database/db.py        | 2 +-
 application/utils/gap_analysis.py | 8 +++++++-
 2 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/application/database/db.py b/application/database/db.py
index 3b96d7b03..16cd54ee8 100644
--- a/application/database/db.py
+++ b/application/database/db.py
@@ -371,7 +371,7 @@ def instance(cls, session, neo_db: NEO_DB):
         if cls.__instance is None:
             cls.__instance = cls.__new__(cls)
             cls.neo_db = neo_db
-            cls.graph = cls.load_cre_graph(session)
+            # cls.graph = cls.load_cre_graph(session) # TODO: Call this in a seperate statup mode
         return cls.__instance
 
     def __init__(sel):
diff --git a/application/utils/gap_analysis.py b/application/utils/gap_analysis.py
index 47f97e830..147fef3d3 100644
--- a/application/utils/gap_analysis.py
+++ b/application/utils/gap_analysis.py
@@ -1,4 +1,10 @@
-PENALTIES = {"RELATED": 20, "CONTAINS_UP": 2, "CONTAINS_DOWN": 1, "LINKED_TO": 0}
+PENALTIES = {
+    "RELATED": 20,
+    "CONTAINS_UP": 2,
+    "CONTAINS_DOWN": 1,
+    "LINKED_TO": 0,
+    "SAME": 0,
+}
 
 
 def get_path_score(path):