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Plotting: add wire diagram generator for morphologies #192

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sanjayankur31 opened this issue Sep 30, 2022 · 0 comments
Open

Plotting: add wire diagram generator for morphologies #192

sanjayankur31 opened this issue Sep 30, 2022 · 0 comments
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good first issue A good issue for newcomers to work on Help wanted P: low Low priority T: enhancement Type: enhancement

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@sanjayankur31
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Is your feature request related to a problem? Please describe.
Wire diagrams seem to be a good way of showing cell morphology, especially in conjunction with recordings. Example from Reorganization of CA1 dendritic dynamics by hippocampal sharp-wave ripples during learning - ScienceDirect, Fig 1C:

image

Describe the solution you'd like
A plotter, similar to the plot2D function which generates a wire diagram would be very useful to have.

Describe alternatives you've considered
NA

Additional context
I'm not sure how much work this is. There may be libraries out there that could help perhaps. One needs to be able to detect branch points and so on to generate these. The plot2D implementation is rather naive---we just draw lines between points there without any additional intelligence/analysis. (May be worth a student project!)

@sanjayankur31 sanjayankur31 added T: enhancement Type: enhancement Help wanted P: low Low priority good first issue A good issue for newcomers to work on labels Sep 30, 2022
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Labels
good first issue A good issue for newcomers to work on Help wanted P: low Low priority T: enhancement Type: enhancement
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