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38 Open 110 Closed
38 Open 110 Closed
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Issues list

Add functionality to overlay data on to 3D visualisations T: enhancement Type: enhancement
#426 opened Sep 12, 2024 by sanjayankur31
Tracking: multiple 3D vispy based visualisations do not work in a single jupyter notebook T: bug Type: bug
#422 opened Sep 5, 2024 by sanjayankur31
Make getting model file list SBML aware T: enhancement Type: enhancement
#372 opened May 29, 2024 by sanjayankur31
Implement exporting to Neuroglancer formats T: enhancement Type: enhancement
#369 opened May 22, 2024 by sanjayankur31
1
[Bug] pynml-plotmorph: vispy: no mouse events T: bug Type: bug
#358 opened May 13, 2024 by Sietse20
@sanjayankur31
3
Add analysis of KineticState channels to pynml-channelanalysis T: enhancement Type: enhancement
#357 opened May 8, 2024 by sanjayankur31
Extend pynml to include a -biosimulations flag to submit simulations T: enhancement Type: enhancement
#347 opened Apr 23, 2024 by sanjayankur31
Implement functions to send generated OMEX file to Biomodels using API T: enhancement Type: enhancement
#337 opened Apr 18, 2024 by sanjayankur31
1
Implement metadata generation for OMEX file generation T: enhancement Type: enhancement
#336 opened Apr 18, 2024 by sanjayankur31
1
[Bug] ExportSWC: exceptions are wrong T: bug Type: bug
#330 opened Apr 9, 2024 by sanjayankur31
2
Add option to generate SEDML file from LEMS and use this as master in exported OMEX archive good first issue A good issue for newcomers to work on Help wanted T: enhancement Type: enhancement
#329 opened Apr 9, 2024 by pgleeson
1
@sanjayankur31
Add utility function to create SpikeArray from file good first issue A good issue for newcomers to work on T: enhancement Type: enhancement
#328 opened Apr 9, 2024 by sanjayankur31
[cell analysis] Implement morphological statistics for NeuroML cell models good first issue A good issue for newcomers to work on Help wanted T: enhancement Type: enhancement
#319 opened Mar 13, 2024 by sanjayankur31
[vispy viewer] investigate if we can record a video of the rotating image good first issue A good issue for newcomers to work on Help wanted T: enhancement Type: enhancement
#318 opened Mar 13, 2024 by sanjayankur31
2
2
Add warnings about missing files of model during visualisation T: enhancement Type: enhancement
#315 opened Mar 8, 2024 by lej0hn
1
Ascertain and set NEURON_HOME if the environment variable is not set good first issue A good issue for newcomers to work on Help wanted T: enhancement Type: enhancement
#308 opened Mar 1, 2024 by sanjayankur31
@glitcher007
5
archiving/nsg: include HDF5 exports T: enhancement Type: enhancement
#285 opened Dec 6, 2023 by sanjayankur31
1
2
Add tests running simple neuron + netpyne sims on nsg good first issue A good issue for newcomers to work on T: enhancement Type: enhancement
#268 opened Nov 2, 2023 by sanjayankur31
@sanjayankur31
1
Add function to generate LFP plots Help wanted P: low Low priority T: enhancement Type: enhancement
#241 opened Jul 15, 2023 by sanjayankur31
2
As a user, I want to be able to run my simulations using different backends without modifying my Python NeuroML simulation code T: enhancement Type: enhancement
#210 opened Jan 5, 2023 by sanjayankur31
Plotting: add wire diagram generator for morphologies good first issue A good issue for newcomers to work on Help wanted P: low Low priority T: enhancement Type: enhancement
#192 opened Sep 30, 2022 by sanjayankur31
Generalise modification of parameters in NeuroMLController good first issue A good issue for newcomers to work on Help wanted T: enhancement Type: enhancement
#150 opened Dec 1, 2021 by sanjayankur31
2
Add exit_on_fail and return_string options to validate_neuroml2_lems_file to enable errors in LEMS files to be retrieved programmatically
#142 opened Nov 24, 2021 by jonrkarr
run_lems_with_jneuroml_brian2 surprisingly requires the path to the LEMS file to be in the current directory
#135 opened Nov 23, 2021 by jonrkarr
1
Provide export_to_<sim> methods? P: low Low priority T: enhancement Type: enhancement
#132 opened Nov 11, 2021 by sanjayankur31
@sanjayankur31 @pgleeson
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