From 792f32094c98825796ddd6cbf651fd3b6aeee14e Mon Sep 17 00:00:00 2001
From: Ohad Mosafi <omosafi@nvidia.com>
Date: Tue, 11 May 2021 14:15:36 -0700
Subject: [PATCH 1/2] Fix calendar versioning

Current month tag exists:
- minor promotion -> increase LSB by one
- patch promotion -> increase LSB by one

Current month tag does not exist:
- minor promotion -> current month versioning with 0 as LSB
- patch promotion -> Latest tag and promote LSB by one
---
 ci/release/update-version.sh | 37 +++++++++++++++++++++++++-----------
 1 file changed, 26 insertions(+), 11 deletions(-)

diff --git a/ci/release/update-version.sh b/ci/release/update-version.sh
index 1a32c75a8..346483a11 100644
--- a/ci/release/update-version.sh
+++ b/ci/release/update-version.sh
@@ -24,15 +24,33 @@
 
 set -e
 
-# Overwrite argument value to always trigger a patch release
-RELEASE_TYPE="patch"
+# Grab argument for release type
+RELEASE_TYPE=$1
+
+# Calender versioning only supports "minor"= a PR crated from clara-parabricks/dev branch
+# or "patch"= a PR merged from any other branch
+if [ "$RELEASE_TYPE" != "patch" ] && [ "$RELEASE_TYPE" != "minor" ]; then
+  echo "Incorrect release type; use 'minor', or 'patch' as an argument"
+  exit 1
+fi
 
 # Get current version and calculate next versions
-CURRENT_TAG=`git tag | grep -xE "v$(date '+%Y\.%m')\.[0-9]+" | sort --version-sort | tail -n 1 | tr -d 'v'`
+CURRENT_TAG=$(git tag | grep -xE "v$(date '+%Y\.%m')\.[0-9]+" | sort --version-sort | tail -n 1 | tr -d 'v')
+
 # In case no tag exists for this month
 if [ -z "${CURRENT_TAG}" ]; then
-  CURRENT_TAG="$(date '+%Y.%m').-1"
+  if [ "$RELEASE_TYPE" == "minor" ]; then
+    # In case no tag exists for this month & this is a
+    # "minor" release (merged from branch clara-parabricks/dev) - create new tag for this month
+    CURRENT_TAG="$(date '+%Y.%m').-1"
+  elif [ "$RELEASE_TYPE" == "patch" ]; then
+    # In case no tag exists for this month & this is a "patch" release
+    # (merged from some branch that is not clara-parabricks/dev) -
+    # take latest Tag that was pushed and increase Patch location in 1
+    CURRENT_TAG=$(git tag | grep -xE "v[0-9]+\.[0-9]+\.[0-9]+" | sort --version-sort | tail -n 1 | tr -d 'v')
+  fi
 fi
+
 CURRENT_MAJOR=`echo $CURRENT_TAG | awk '{split($0, a, "."); print a[1]}'`
 CURRENT_MINOR=`echo $CURRENT_TAG | awk '{split($0, a, "."); print a[2]}'`
 CURRENT_PATCH=`echo $CURRENT_TAG | awk '{split($0, a, "."); print a[3]}'`
@@ -40,13 +58,10 @@ NEXT_PATCH=$((CURRENT_PATCH + 1))
 NEXT_FULL_TAG=""
 NEXT_SHORT_TAG=""
 
-if [ "$RELEASE_TYPE" == "patch" ]; then
-  NEXT_FULL_TAG="${CURRENT_MAJOR}.${CURRENT_MINOR}.${NEXT_PATCH}"
-  NEXT_SHORT_TAG="${CURRENT_MAJOR}.${CURRENT_MINOR}"
-else
-  echo "Incorrect release type; use 'major', 'minor', or 'patch' as an argument"
-  exit 1
-fi
+NEXT_FULL_TAG="${CURRENT_MAJOR}.${CURRENT_MINOR}.${NEXT_PATCH}"
+NEXT_SHORT_TAG="${CURRENT_MAJOR}.${CURRENT_MINOR}"
+
+
 if [[ "$CURRENT_PATCH" == "-1" ]]; then
   echo "Preparing release [$NEXT_FULL_TAG]"
 else

From f3a81cc74b74f2b59a9d9b5f694070ea33b3dcc4 Mon Sep 17 00:00:00 2001
From: Ohad Mosafi <omosafi@nvidia.com>
Date: Wed, 12 May 2021 09:09:38 -0700
Subject: [PATCH 2/2] install twine using pip

---
 ci/release/pypi_uploader.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ci/release/pypi_uploader.sh b/ci/release/pypi_uploader.sh
index ac6765361..61979979d 100644
--- a/ci/release/pypi_uploader.sh
+++ b/ci/release/pypi_uploader.sh
@@ -43,7 +43,7 @@ for f in "${WORKSPACE}"/pygenomeworks/genomeworks_wheel/*.whl; do
         echo "genomeworks Whl file does not exist"
         exit 1
     else
-        conda install -c conda-forge twine
+        pip install twine
         python3 -m pip install 'readme-renderer>=21.0' # to support py3.5 images
         # Change .whl package name to support PyPI upload
         MODIFIED_WHL_NAME=$(dirname ${f})/$(basename "${f}" | sed -r "s/(.*-.+-.+)-.+-.+.whl/\1-none-any.whl/")